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SCNpilot_expt_1000_bf_scaffold_1731_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 1731..2636

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR80561.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.0
  • Coverage: 301.0
  • Bit_score: 582
  • Evalue 2.50e-163
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 76.0
  • Coverage: 296.0
  • Bit_score: 473
  • Evalue 3.70e-131
  • rbh
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036DA892 similarity UNIREF
DB: UNIREF100
  • Identity: 78.7
  • Coverage: 296.0
  • Bit_score: 473
  • Evalue 1.20e-130
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGGATACATTAACCCGAATCCGGGCCTTCATCGACGTCATCGACGCCGAAGGCTTTTCCGCAGCATCCCGCAAGACCGGCCGTTCCAAGGCGCTGCTGTCCAAATATGTGCGGGAGCTGGAGGATGAGTTGGGCACGCTGCTCCTCAACCGCACCACCCGCCAGTTCTCGATGACCGAGGCCGGCCACACCTATTACCGCACCGCCTCCGACATCCTGAAGGAGATAGACAACCTCGCCGATCTCGTGCGCGAGAAGAACACGGACCTGCGCGGCAAGCTGAAAGTCTCCGCCCCGCGCACCTTCGTCGATGCCGATATCGGCCAGTCGCTGATCGATTTCGGCCGCGAGCATCCCGAGCTTTCGCTGGAGATCGTCTCGGACGACCGCTTCGTCGACCTGGTCGAGGAAGGCTTCGATGTCGCGATCCGCATCACGCGGCTGGAGGATTCGGCCCTCATCGCCCGCAAGCTCGGCGATTTCTTCCTGAAGATCTGCGTGACGGAGGAGTTCATCGAGCGCGTCGGCCCGATCAACCACCCGAGCGACCTTGCCCGCCTGCCCTGCATCATCGACACGAACGGCAAGTCGCACAGCAACTGGCGCTTCGTCGACGAGAAGGGCGCGGGCTTTTCCGTGCCGGTCGGCGGCCATATCGAGGTGAACAGCCCGACGGCCGCGGTGCGCGCGGCGGCAAGCGGCCTCGGTGTGGCGCAGGTGCCGGCCTTCATCGCCCGCCCATGCCTCGATTCGGGGCGCATCGTCTCGATCCTCGAGGATTACCTTCCGACCGACCGCGGCATCTATGCGATCTACCCGCACCGGCGCTACCTGCCGGCCAAGGTCCGCACCTTCGTCGATTTCCTGCACGCCTGGTTCCGCCGCAATCCCGGCATCGAGGCATGA
PROTEIN sequence
Length: 302
MDTLTRIRAFIDVIDAEGFSAASRKTGRSKALLSKYVRELEDELGTLLLNRTTRQFSMTEAGHTYYRTASDILKEIDNLADLVREKNTDLRGKLKVSAPRTFVDADIGQSLIDFGREHPELSLEIVSDDRFVDLVEEGFDVAIRITRLEDSALIARKLGDFFLKICVTEEFIERVGPINHPSDLARLPCIIDTNGKSHSNWRFVDEKGAGFSVPVGGHIEVNSPTAAVRAAASGLGVAQVPAFIARPCLDSGRIVSILEDYLPTDRGIYAIYPHRRYLPAKVRTFVDFLHAWFRRNPGIEA*