name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1731_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..1140)
|
Diaminopimelate decarboxylase {ECO:0000313|EMBL:EYR80560.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ornithine decarboxylase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037691BD
rbh
ornithine, DAP, or arginine decarboxylase (EC:4.1.1.-)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1731..2636
|
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR80561.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
rbh
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036DA892
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2710..3351
|
ABC-type transport system periplasmic component-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F026_9RHIZ
rbh
ABC-type transport system periplasmic component-like protein {ECO:0000313|EMBL:EYR80562.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3345..4355
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJW1_9RHIZ
rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR80563.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative nickel ABC transporter, permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4367..4579)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80564.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4576..4755)
|
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8P2_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EYR80565.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acetyltransferase, ribosomal protein N-acetylase
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5347..6039)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4C0_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80566.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6192..6830)
|
2-dehydro-3-deoxy-phosphogluconate aldolase Eda n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F021_9RHIZ
rbh
2-dehydro-3-deoxy-phosphogluconate aldolase Eda {ECO:0000313|EMBL:EYR80567.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EYR80567.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
eda; 2-dehydro-3-deoxy-phosphogluconate aldolase Eda (EC:4.1.2.14)
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6985..7470
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80568.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7525..8463
|
UPF0176 protein SHLA_11c000740 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8494..9870)
|
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative beta-glucosidase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A0Q1_RHIFH
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10050..10949
|
Cyclic di-GMP phosphodiesterase response regulator RpfG {ECO:0000313|EMBL:EYR80572.1}; EC=3.1.4.52 {ECO:0000313|EMBL:EYR80572.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphohydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3D4DC
rbh
metal-dependent phosphohydrolase protein
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10993..12177)
|
Putative oxidoreductase y4hM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER52_9RHIZ
rbh
Putative oxidoreductase y4hM {ECO:0000313|EMBL:EYR80573.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR80573.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative oxidoreductase/dehydrogenase protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12321..13373)
|
Putative endonuclease {ECO:0000313|EMBL:EYR80574.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative endonuclease
rbh
Putative endonuclease n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8X9_RHISN
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_15
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13689..14639)
|
D-ribose-binding periplasmic protein {ECO:0000313|EMBL:KEC80160.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
D-ribose-binding periplasmic protein precursor; K10439 ribose transport system substrate-binding protein
rbh
D-ribose-binding periplasmic protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KKL6_RHISN
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14700..15704)
|
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXQ8_9RHIZ
rbh
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR80576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase (EC:3.6.3.17); K10440 ribose transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15742..17268)
|
Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD88_9RHIZ
rbh
ABC-type sugar transport system ATPase component {ECO:0000313|EMBL:EYR80577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17474..18523
|
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK8_9RHIZ
rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LacI family transcription regulator; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18573..20081)
|
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS7_9RHIZ
rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EYR80579.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1731_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20423..21364)
|
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Xylose isomerase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=XYLA_RHISN
rbh
|