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SCNpilot_expt_1000_bf_scaffold_1731_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1731_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1140)
DNA (1140bp) protein (380aa)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:EYR80560.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ornithine decarboxylase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037691BD rbh
ornithine, DAP, or arginine decarboxylase (EC:4.1.1.-) rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1731..2636
DNA (906bp) protein (302aa)
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR80561.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
LysR family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036DA892 rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2710..3351
DNA (642bp) protein (214aa)
ABC-type transport system periplasmic component-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F026_9RHIZ rbh
ABC-type transport system periplasmic component-like protein {ECO:0000313|EMBL:EYR80562.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3345..4355
DNA (1011bp) protein (337aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJW1_9RHIZ rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR80563.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative nickel ABC transporter, permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4367..4579)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80564.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1731_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4576..4755)
DNA (180bp) protein (60aa)
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8P2_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EYR80565.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acetyltransferase, ribosomal protein N-acetylase
SCNpilot_expt_1000_bf_scaffold_1731_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5347..6039)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4C0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80566.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6192..6830)
DNA (639bp) protein (213aa)
2-dehydro-3-deoxy-phosphogluconate aldolase Eda n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F021_9RHIZ rbh
2-dehydro-3-deoxy-phosphogluconate aldolase Eda {ECO:0000313|EMBL:EYR80567.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EYR80567.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
eda; 2-dehydro-3-deoxy-phosphogluconate aldolase Eda (EC:4.1.2.14) rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6985..7470
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJV6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80568.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1731_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7525..8463
DNA (939bp) protein (313aa)
UPF0176 protein SHLA_31c00030 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZX7_9RHIZ rbh
UPF0176 protein SHLA_11c000740 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rhodanese-related sulfurtransferase; K07146 UPF0176 protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8494..9870)
DNA (1377bp) protein (459aa)
Beta-glucosidase {ECO:0000256|RuleBase:RU361175}; EC=3.2.1.21 {ECO:0000256|RuleBase:RU361175};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative beta-glucosidase; K05350 beta-glucosidase [EC:3.2.1.21] rbh
Putative beta-glucosidase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A0Q1_RHIFH rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10050..10949
DNA (900bp) protein (300aa)
Cyclic di-GMP phosphodiesterase response regulator RpfG {ECO:0000313|EMBL:EYR80572.1}; EC=3.1.4.52 {ECO:0000313|EMBL:EYR80572.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphohydrolase n=1 Tax=Rhizobium mongolense RepID=UPI0003B3D4DC rbh
metal-dependent phosphohydrolase protein
SCNpilot_expt_1000_bf_scaffold_1731_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10993..12177)
DNA (1185bp) protein (395aa)
Putative oxidoreductase y4hM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER52_9RHIZ rbh
Putative oxidoreductase y4hM {ECO:0000313|EMBL:EYR80573.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR80573.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative oxidoreductase/dehydrogenase protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12321..13373)
DNA (1053bp) protein (351aa)
Putative endonuclease {ECO:0000313|EMBL:EYR80574.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative endonuclease rbh
Putative endonuclease n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8X9_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_15
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13689..14639)
DNA (951bp) protein (317aa)
D-ribose-binding periplasmic protein {ECO:0000313|EMBL:KEC80160.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
D-ribose-binding periplasmic protein precursor; K10439 ribose transport system substrate-binding protein rbh
D-ribose-binding periplasmic protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KKL6_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14700..15704)
DNA (1005bp) protein (335aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXQ8_9RHIZ rbh
Ribose/xylose/arabinose/galactoside ABC-type transport system permease component {ECO:0000313|EMBL:EYR80576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase (EC:3.6.3.17); K10440 ribose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15742..17268)
DNA (1527bp) protein (509aa)
Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD88_9RHIZ rbh
ABC-type sugar transport system ATPase component {ECO:0000313|EMBL:EYR80577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17474..18523
DNA (1050bp) protein (350aa)
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK8_9RHIZ rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LacI family transcription regulator; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18573..20081)
DNA (1509bp) protein (503aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS7_9RHIZ rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EYR80579.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_1731_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20423..21364)
DNA (942bp) protein (314aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylA; xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5] rbh
Xylose isomerase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=XYLA_RHISN rbh
Displaying 20 items

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