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SCNpilot_expt_1000_bf_scaffold_1731_curated_18

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 17474..18523

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional repressor CytR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMK8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 345.0
  • Bit_score: 625
  • Evalue 2.80e-176
  • rbh
Transcriptional regulator LacI family {ECO:0000313|EMBL:EYR80578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.0
  • Coverage: 345.0
  • Bit_score: 625
  • Evalue 4.00e-176
LacI family transcription regulator; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG similarity KEGG
DB: KEGG
  • Identity: 88.4
  • Coverage: 345.0
  • Bit_score: 599
  • Evalue 5.20e-169
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1050
GTGAGAAACAGTTTGTCGTCGTCCAGTCCCGCAACGATCGAGGATGTCGCGCGCATCGCGCAGGTCTCGATCGCGACCGTCTCGCGGGCGATCCACACCCCGGAGAAGGTCGCGAATTCGACGCGGCTTAAGGTCAACCAGGCGATCGCCATCACCGGCTACACGACCAATGCGATGGCGCGCAGTCTGCGCCTCGGCCGGTCGAACATGATCCTGGTCGTGGCGCCCGACATCGGCGACCCGAACTTCTCCAATATCCTCGTCGGCCTTGAGAACGAGGCGCGCGCGCATGGCTACGGCATCCTGATCGGCCATACGCAGAACGATCCGCAGCGCGGGCTGGAATACCTGAAGTTCCTGAATTCCAACCAGGCGGCCGGGCTGATCCTCTTCACCGGCATCCTGCCCTTCGGCCACCAGTCGATGACGGCGCGCCTGCCGCCGTGCGTCGGCGTCTTCGAGCCGGTCTACAAGGGCGGCATCCCCTATGTCGGCGTCGACGACACCGAGGGCGCGCGCAAGGCCGTGGACCTTTTGATCGCCGAGGGCCACCGCAAGATCGCCTTCATCGGCGATTCGCGCACCCGCCTTGCCTACAGCCGCCGCCGGCAGGGCTATGACGAGGGGCTGGACGCGGCCGGCGTGCCGCCGGGCGAACGCATCGTGCTGGAGGGAGACGGCACGATCGAGAGCGGGCGCCTCGCGCNNNNNNNNGAACAACTCTTCATGCGCGACACGCTGCCGAGCGCCTTCATGTGCGTCAACGACCAGACGGCCATCGGCGTGATGATCGGCCTCGGTGCGCGCGGCTACGACATTCCGACAGATTTTTCCGTGACCGGCTTCGACGACGTGCCGCAGGCGACCTTCATGACGCCCTCGCTCACCACGATCCGCCAGCCGCGCACCGCCATCGGCAAGAGCTCCATGGCGCTGCTGCTGGAGCTCCTCTCCGGCAGCGAGCCGCCGGACGCGGAAATCCTGCTGACGCCGGACCTCATCGTGCGCAACTCGGTCTCGGCCCCGGCCCGGCGGTTTTTGAAACGGTAG
PROTEIN sequence
Length: 350
VRNSLSSSSPATIEDVARIAQVSIATVSRAIHTPEKVANSTRLKVNQAIAITGYTTNAMARSLRLGRSNMILVVAPDIGDPNFSNILVGLENEARAHGYGILIGHTQNDPQRGLEYLKFLNSNQAAGLILFTGILPFGHQSMTARLPPCVGVFEPVYKGGIPYVGVDDTEGARKAVDLLIAEGHRKIAFIGDSRTRLAYSRRRQGYDEGLDAAGVPPGERIVLEGDGTIESGRLAXXXEQLFMRDTLPSAFMCVNDQTAIGVMIGLGARGYDIPTDFSVTGFDDVPQATFMTPSLTTIRQPRTAIGKSSMALLLELLSGSEPPDAEILLTPDLIVRNSVSAPARRFLKR*