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SCNpilot_expt_1000_bf_scaffold_1731_curated_19

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(18573..20081)

Top 3 Functional Annotations

Value Algorithm Source
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.2
  • Coverage: 502.0
  • Bit_score: 860
  • Evalue 7.50e-247
  • rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EYR80579.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 502.0
  • Bit_score: 860
  • Evalue 1.00e-246
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein similarity KEGG
DB: KEGG
  • Identity: 61.6
  • Coverage: 490.0
  • Bit_score: 566
  • Evalue 7.00e-159
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1509
ATGTCAGCGCAGGATGCCAAGACGCAGCAGTTGAATGAACGCCTCCGGTTCGTCGATCTCGACACCGGCCAGCGCGAGGCGTTGCTGAGGGCGCTGCCGACAATCTCCGCCTCGCTCGACGGCGCGCTCGACACCTTCTACCGCAAGGCGCGTGCCACGCCCGAGACGGCACGGTTCTTTTCCAGCGAGGCGCATGTCCAGAGCGCCAAGGGGCGCCAGGTCAAGCATTGGGAGCTGATCGCCTCTGCGAAGTTCGACGCGAATTATGTCGATGCCGTCACGACGATCGGCCGCACGCATGCCCGCCTCGGCCTCGAGCCGCGCTGGTATATCGGCGGCTATGCGCTGATCCTGGAGGCCATCGTCGAGAGCGTCATCGCAAAGCATCTCGAAGGCTTCCTCTACCGCAAGAAGGCGGCGGCGCTCGGCGCGGAGATTTCCTCCATCGTCAAGGCCGCGCTGGTCGACATGGACTATGCCATCTCGGTCTATCTGGAAGCCCTGCAGGAGGAGCGCGAGAAGGTGGAGGCCGAACGGCAGGTGCTGAATGCCGAGCAGGAGGAGGCACTCGGCGCCCTCGATACCTCGCTCAACCGCCTTGCCGGCGGCGATCTCACCGCCGCCATCGACAATCCGCTCGCCCCGCAGTTCGAGCGGCTGCGCTCCAATTTCAACGCGGCGATCGAGAAGCTCGACGACACGCTCGGCGCCATCGTGACGGCGGCGGACGATGCGGCCGGCAATTCCGGCGAGCTCGCCCATGCGACGGATGACATGGCCCGGCGCACGGAGCAGCAGGCCGCCTCGCTCGAAGAGACCGCGGCGGCCGTCGAGGAGATCACCACCATTTCCCGCGAGGCGGCGCAGCGCGCCGAAGAGGCCCGTCGTGTCGTCGCCAGCGCGACGGACGAGGCCAAGCGCTCCGGCGACGTCGTCGAGCAGGCGGTATCGGCCATGAGCGCGATCCAGGAATCGTCCGGCAGGATCACGCAGATCATCGGCGTCATCGACCAGATCTCCTTCCAGACCAACCTCCTGGCGCTGAATGCGGGCGTCGAGGCGGCGCGGGCCGGCGAGGCCGGCAAGGGCTTTGCGGTCGTTGCGCAGGAGGTGCGCGAGCTCGCACAGAAATCCGCGGAGGCCGCCAAGGAGATCAAGGCGCTGATCGACAAGTCCTTCGAAGACGTGCAGCGCGGCGTGTCGCTGGTCAACCGGACGGGCGAGGCGCTGCACCATATCGGCGAGCAGGTCGTGCACATCAATGCGCATATCGACGCCATCGCCAGCTCCGCCCGCGAGCAGTCGGCCGGTATTTCGGAGATCAACACCGCCGTCGGCAGCATGGACCAGATGACCCAGCAGAACGCCGCGATGGTCGAGCAGACCAACGCTGCCACGCACAACCTCATGAAGATCAGCGCGACGCTGAAGGACCTCGTCGACCGCTTCACCGTCACGGCCGGCCGCAGCCAGCCTTCGGCCAAGCCGGCGCAGCGGCGGTACGGGTAA
PROTEIN sequence
Length: 503
MSAQDAKTQQLNERLRFVDLDTGQREALLRALPTISASLDGALDTFYRKARATPETARFFSSEAHVQSAKGRQVKHWELIASAKFDANYVDAVTTIGRTHARLGLEPRWYIGGYALILEAIVESVIAKHLEGFLYRKKAAALGAEISSIVKAALVDMDYAISVYLEALQEEREKVEAERQVLNAEQEEALGALDTSLNRLAGGDLTAAIDNPLAPQFERLRSNFNAAIEKLDDTLGAIVTAADDAAGNSGELAHATDDMARRTEQQAASLEETAAAVEEITTISREAAQRAEEARRVVASATDEAKRSGDVVEQAVSAMSAIQESSGRITQIIGVIDQISFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQKSAEAAKEIKALIDKSFEDVQRGVSLVNRTGEALHHIGEQVVHINAHIDAIASSAREQSAGISEINTAVGSMDQMTQQNAAMVEQTNAATHNLMKISATLKDLVDRFTVTAGRSQPSAKPAQRRYG*