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SCNpilot_expt_1000_bf_scaffold_7575_curated_11

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6686..7633)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUS2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.3
  • Coverage: 315.0
  • Bit_score: 546
  • Evalue 2.00e-152
  • rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR82298.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.3
  • Coverage: 315.0
  • Bit_score: 546
  • Evalue 2.80e-152
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 58.1
  • Coverage: 310.0
  • Bit_score: 367
  • Evalue 5.10e-99
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 948
ATGCAGGACCTGAACGATCTCGCGCTTTATGCCGCCGTGGTGCGGCACAAGGGCTTCACCGCGGCCGCCAATGCGCTTTCGGTGCCGAAATCGAAGATCAGCAAGCGCATCNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGCTGATCGAGCGGTCCACCCGCAAGCTCGCCATCACCGACATCGGCCAATCCTTCTACGAGCGCTGCGAGGCGGTGCTCTCCGGCGTGGAGGCCGCCGAGGCCGTGGTGGCCGTCGCCAAGGCCGAGCCGGCGGGGACCGTGCGCATGTCGATGCCGCCAGGCTTTGCGCCTCTCGTGGCCGACATCCTTCCCGGCTTCATGAAGCGCTATCCGCGGGTGCGCCTGTCCATCCTCACCACCGGGCGGCCGGTGGATCTCATCGAGGAGCGGATCGACGTCGCGCTGCGCGTGCGCGACACCTACGATACAGACCAGTCGCTGATCGTGCGCCGGTTCGGCGGCACGCGGCGCTACCTCGCGGCAAGCCCGCGCTTCCTGGAGCGTCACGGGCCCATCGGCCTTGACGACATCGCCCGCGTGCCCACCCTCTCCATGCAGGAAAACACGCCGCGCGCCATCTGGACGCTTTTCCACGCCGATGGCGAGATGCGCGACGTCGCCCACTCGCCCGTGCTCGCCTGCTCGGATTTCAGCGTGCTGGAGCGGGCGACGATCGAAGGGGTCGGCCTCGGCCTGCTGCCGGACATGATCGTCGAGCGCGGGTTCCGCACCGGCGTGCTGACGCCGGTGCTGCCGGAATGGACGAGCGCGGAGTCTGCCGTGCACGCCGTCTTCACCTCGCGTCACGGCATGTTGCCGGCCGTGCGCGCCCTCCTCGACCACCTTGCGGAGAACCTGCCGCACTCCATGCAGCGCTGCCAGGAAATCGTGCCGAGGGCCGCTTCCGACGGCAACTGGTCGATCTGA
PROTEIN sequence
Length: 316
MQDLNDLALYAAVVRHKGFTAAANALSVPKSKISKRIXXXXXXXXXRLIERSTRKLAITDIGQSFYERCEAVLSGVEAAEAVVAVAKAEPAGTVRMSMPPGFAPLVADILPGFMKRYPRVRLSILTTGRPVDLIEERIDVALRVRDTYDTDQSLIVRRFGGTRRYLAASPRFLERHGPIGLDDIARVPTLSMQENTPRAIWTLFHADGEMRDVAHSPVLACSDFSVLERATIEGVGLGLLPDMIVERGFRTGVLTPVLPEWTSAESAVHAVFTSRHGMLPAVRALLDHLAENLPHSMQRCQEIVPRAASDGNWSI*