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SCNpilot_expt_1000_bf_scaffold_7575_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7575_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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687..1853
DNA (1167bp) protein (389aa)
Penicillin-binding protein 1A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUS6_9RHIZ rbh
Penicillin-binding protein 1A {ECO:0000313|EMBL:EYR82293.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR82293.1};; EC=3.4.-.- {ECO:0000313|EMBL:EYR82293.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
penicillin-binding protein 1A family; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] rbh
SCNpilot_expt_1000_bf_scaffold_7575_curated_2
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1986..2687)
DNA (702bp) protein (234aa)
Tax=GWF1_Xanthomonadales_69_6_curated
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A568_9CLOT
SCNpilot_expt_1000_bf_scaffold_7575_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2822..3091
DNA (270bp) protein (90aa)
Peptide chain release factor 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD72_9RHIZ
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
prfB; Peptide chain release factor 1 RF-1; K02836 peptide chain release factor 2
SCNpilot_expt_1000_bf_scaffold_7575_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3138..3632)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT41_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82295.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7575_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3664..4167)
DNA (504bp) protein (168aa)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D248_9RHIZ rbh
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase PpnK (EC:2.7.1.23)
SCNpilot_expt_1000_bf_scaffold_7575_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4656..4850)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXI3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82297.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7575_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5049..5252)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0B3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80701.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7575_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5249..5416)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CK66_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80702.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7575_curated_9
unknown

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comp(5486..5611)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7575_curated_10
unknown

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6039..6392
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7575_curated_trna_1
unknown

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comp(6561..6633)
DNA (73bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_7575_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6686..7633)
DNA (948bp) protein (316aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUS2_9RHIZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EYR82298.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_7575_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7765..8388
DNA (624bp) protein (208aa)
FMN-dependent NADH-azoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD68_9RHIZ rbh
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative acyl carrier protein phosphodiesterase; K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
SCNpilot_expt_1000_bf_scaffold_7575_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8453..9382)
DNA (930bp) protein (310aa)
23S rRNA (Guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT38_9RHIZ rbh
23S rRNA (Guanosine-2'-O-)-methyltransferase RlmB {ECO:0000313|EMBL:EYR82300.1}; EC=2.1.1.185 {ECO:0000313|EMBL:EYR82300.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rRNA methylase (EC:2.1.1.-) rbh
Displaying 14 items

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