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SCNpilot_expt_1000_bf_scaffold_4305_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(11553..12167)

Top 3 Functional Annotations

Value Algorithm Source
Putrescine transport system permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCS3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 199.0
  • Bit_score: 368
  • Evalue 6.20e-99
  • rbh
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EYR77381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 199.0
  • Bit_score: 368
  • Evalue 8.70e-99
binding-protein-dependent transporters inner membrane component; K02053 putative spermidine/putrescine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 84.0
  • Coverage: 200.0
  • Bit_score: 337
  • Evalue 2.20e-90
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 615
ATGCGCTCGCTGATCATCGCGATATGGGCCGCGTTCCTGGCAACGGTCGCGGCCACGATGGCGGCGCTCGCGACGACGCGCACCGAGCCCTATCGCGGCCTCACCTTCAAATATGCGCTCATCAACCAGCCGCTGATGGTGCCGGAAATCGTGACGGCCGTGGCGCTCCTGATCGTCTTCTCGCGGATCAAGGTCTGGACCGGCTATTCCGGCCTCGGCTACCTGATCGCCGCCCACACCGCGTTCTGCATCCCCTTCGCGTATCTGCCGATCCGCGCCCGCCTCGAAAGCATGGACCTGACGCTGGAGCGGGCGGCCGCCGACCTCTACGCCACGCCCTGGATGACGTTCCGCCATGTGACGCTGCCGCTGCTGCGCCCGGCGGTCATCGCCGGCTTCATGCTCGCCTTCGTCATTTCGCTCGATGACGTCGTCATCACGGAATTCGTGAAGTCCGGCGGGCAGGACACCCTGCCGACCTACATGCTCGGGCAGCTCCGGCGCGAGACCTCGCCCGAGATCAACGCCATCGCCACGGTCTTCCTTGCGCTTTCGACCGCGCTCGTCGTGATCTTCTTCTTCATCAACAGAAAACAGGCCACAGAGAGGAACTGA
PROTEIN sequence
Length: 205
MRSLIIAIWAAFLATVAATMAALATTRTEPYRGLTFKYALINQPLMVPEIVTAVALLIVFSRIKVWTGYSGLGYLIAAHTAFCIPFAYLPIRARLESMDLTLERAAADLYATPWMTFRHVTLPLLRPAVIAGFMLAFVISLDDVVITEFVKSGGQDTLPTYMLGQLRRETSPEINAIATVFLALSTALVVIFFFINRKQATERN*