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SCNpilot_expt_1000_bf_scaffold_4305_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4305_curated_1
unknown

Not on your lists

3..104
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4305_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161..373)
DNA (213bp) protein (71aa)
Copper chaperone n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP48_9RHIZ
Copper chaperone {ECO:0000313|EMBL:EYR77367.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
heavy metal transport protein; K07213 copper chaperone
SCNpilot_expt_1000_bf_scaffold_4305_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(450..1289)
DNA (840bp) protein (280aa)
Aspartate aminotransferase AspC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEJ3_9RHIZ rbh
Aspartate aminotransferase AspC {ECO:0000313|EMBL:EYR77369.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EYR77369.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate transaminase (EC:2.6.1.1) rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1256..1588)
DNA (333bp) protein (111aa)
Aspartate aminotransferase AspC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEJ3_9RHIZ
Aspartate aminotransferase AspC {ECO:0000313|EMBL:EYR77369.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EYR77369.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate transaminase (EC:2.6.1.1)
SCNpilot_expt_1000_bf_scaffold_4305_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1604..2620)
DNA (1017bp) protein (339aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNV6_9RHIZ rbh
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR77370.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcription regulator LysR family rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_6
unknown

Not on your lists

comp(2662..2898)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4305_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2927..4015
DNA (1089bp) protein (363aa)
Extracellular solute-binding protein, ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EH24_9RHIZ rbh
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EYR77372.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Extracellular solute-binding protein, ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4104..5138
DNA (1035bp) protein (345aa)
ABC-type spermidine/putrescine transport systemATPase component {ECO:0000313|EMBL:EYR77373.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter ATPase rbh
Spermidine/putrescine ABC transporter ATPase subunit n=8 Tax=Rhizobium meliloti PF9_SINMB">RepID=F6BPF9_SINMB rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5135..5989
DNA (855bp) protein (285aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES42_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR77374.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter permease rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5986..6783
DNA (798bp) protein (266aa)
Putative sulfate transport system permease protein CysT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CA84_9RHIZ rbh
Putative sulfate transport system permease protein CysT {ECO:0000313|EMBL:EYR77375.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport systems inner membrane component; K02053 putative spermidine/putrescine transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6828..7610
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ30_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR77376.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7647..7895)
DNA (249bp) protein (83aa)
Amidohydrolase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUK4_9RHIZ
Amidohydrolase 3 {ECO:0000313|EMBL:EYR77378.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Amidohydrolase 3; K07047
SCNpilot_expt_1000_bf_scaffold_4305_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7892..9049)
DNA (1158bp) protein (386aa)
Amidohydrolase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUK4_9RHIZ rbh
Amidohydrolase 3 {ECO:0000313|EMBL:EYR77378.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative TIM-barrel fold metal-dependent hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9295..9603)
DNA (309bp) protein (103aa)
6-aminohexanoate-dimer hydrolase NylB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES37_9RHIZ
6-aminohexanoate-dimer hydrolase NylB {ECO:0000313|EMBL:EYR77379.1}; EC=3.5.1.46 {ECO:0000313|EMBL:EYR77379.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6-aminohexanoate-dimer hydrolase (EC:3.5.1.46)
SCNpilot_expt_1000_bf_scaffold_4305_curated_15
unknown

Not on your lists

9794..10543
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4305_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10510..11550)
DNA (1041bp) protein (347aa)
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putrescine-binding periplasmic protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAM8_9RHIZ rbh
family 1 extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4305_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11553..12167)
DNA (615bp) protein (205aa)
Putrescine transport system permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCS3_9RHIZ rbh
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:EYR77381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transporters inner membrane component; K02053 putative spermidine/putrescine transport system permease protein rbh
Displaying 17 items

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