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SCNpilot_expt_1000_bf_scaffold_4305_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4104..5138

Top 3 Functional Annotations

Value Algorithm Source
ABC-type spermidine/putrescine transport systemATPase component {ECO:0000313|EMBL:EYR77373.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.0
  • Coverage: 344.0
  • Bit_score: 609
  • Evalue 2.90e-171
spermidine/putrescine ABC transporter ATPase similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 343.0
  • Bit_score: 549
  • Evalue 1.00e-153
  • rbh
Spermidine/putrescine ABC transporter ATPase subunit n=8 Tax=Rhizobium meliloti PF9_SINMB">RepID=F6BPF9_SINMB similarity UNIREF
DB: UNIREF100
  • Identity: 80.5
  • Coverage: 343.0
  • Bit_score: 549
  • Evalue 3.30e-153
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1035
ATGTCCGGACTGACCCTCCAGAACGTCACCAAGCAATTCGGCACGTTTACGGCTGTCAGGAACGTGCAGCTCACGGTGCCGCACGGCACCTTCGTCTGCCTGCTCGGCCCCTCCGGCTGCGGCAAGACCACGCTGATGCGCATGGTCGCCGGCCTCGACCTGCCGACGAGCGGCGAGATCCGGCTCGACGACAGGGACATCACCCATGTCCCGACGCACAAGCGCGACCTCGGTATGGTCTTCCAGTCGCTGGCGCTCTTCCCGCATCTGACGGTCGGCGAGAACATCGCCTATTCGCTGCGCATCCGCGGCATCGGCAAGGAGGAGCAGAAGAAGCGCGTCGACGAGCTGCTCTCGATGATCCATCTCACGGGCTACGCCGACCGCCCCGTCGCGAAGCTCTCCGGCGGCCAGCGCCAGCGCGTCGCCATTGCCCGTGCGCTCGCCATCTCGCCGAAGCTCTTCCTGCTCGACGAGCCGCTTTCGGCGCTCGACGCCAAGCTGCGCGAGGCCATGCAGGTGGAATTGCGCCAGCTCCAGCAGCGCCTCGGCATCACCACCATCGTCGTCACCCACGACCAGCGCGAGGCGATGACCATGGCCGACACCGTGGTCGTGATGAACGGCGGCGAGATCCGCCAGGCCGCCCCGCCGGTCGAGATCTACCGCCGCCCGGCCGATACCTTCGTCGCCGACTTCATCGGGATGACGAACCTCATCGATTTTTCCGCGGACGCCTCCGGCGCCTCGGTTCTCGGCAGCCCCATCACCGGCCTTGCCATTCCGCCCGGCCTCAAGGCCGGCGTCCTCTCGGTGCGTCCGGAGGACGTGCACCTCGCGGCGCCCGGCAACGGCTCGATCACCGGCAAGGTCACGTTCATTCGCGATCTCGGCGGCACGATCGAGACCTTCGTGGAGGCCGGCGGCAGGCAGGTCGTCGCCGTCTCCATGCCGAATGCGCGGCCGGACGTTTCCGTCGGGCAGGAGGTGGGCCTCAATCTGAACCCCGCAGACTGCGTGGTGCTGAAGTCATGA
PROTEIN sequence
Length: 345
MSGLTLQNVTKQFGTFTAVRNVQLTVPHGTFVCLLGPSGCGKTTLMRMVAGLDLPTSGEIRLDDRDITHVPTHKRDLGMVFQSLALFPHLTVGENIAYSLRIRGIGKEEQKKRVDELLSMIHLTGYADRPVAKLSGGQRQRVAIARALAISPKLFLLDEPLSALDAKLREAMQVELRQLQQRLGITTIVVTHDQREAMTMADTVVVMNGGEIRQAAPPVEIYRRPADTFVADFIGMTNLIDFSADASGASVLGSPITGLAIPPGLKAGVLSVRPEDVHLAAPGNGSITGKVTFIRDLGGTIETFVEAGGRQVVAVSMPNARPDVSVGQEVGLNLNPADCVVLKS*