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SCNpilot_expt_1000_bf_scaffold_4305_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 5135..5989

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES42_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.7
  • Coverage: 284.0
  • Bit_score: 522
  • Evalue 3.60e-145
  • rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR77374.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.7
  • Coverage: 284.0
  • Bit_score: 522
  • Evalue 5.00e-145
ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 284.0
  • Bit_score: 476
  • Evalue 5.40e-132
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 855
ATGAGGCGCGAAGCCCCGCAGAAGCTTTCCGACTACGGTCCGCTGGTCTTCCCGGCGGGCATGCTGATCGTCTTCTTCGTCGTGCCCTTCGCGACGATGATCGCCGTCTCCTTCTTCAAGCGCGATCCGGCCGGCTTCTATTCGGCCGATTTCGTCTTCGACAACTACGCCCGCTTCCTGAGCCTGTTCTTCGGCAAGGTGCTCGGCTTCTCGCTGTTCCTGGCGATCGCCGTCGCCATCTGCTGCGTCGTTCTTGCGGTTCCCTTCACCTATCTCCTCTCGCGCGCCGGGCGGCACGCCCAGGTGCTCTGGCTGGTGGCGCTGCTCTCGGTGCTGTCGCTGTCGGAGGTCATCATCGGCTTTGCCTGGTCGACGCTCTTCTCGCGCACCGCCGGCATCACCAACATCCTCGTCGCGCTCGGCATCCTGAAGGAGGCGGTGGCGCTGAACCCGAGCTTCGGCGCCGTGCTGACCGCCATGGTCTACCAGGCGCTGCCCTATACGGTGCTGGTACTCTATCCCGCGCTCGTGCGGCTCGACCCGACGCTGACGGAGGCGGCGCGCACGCTCGGCGCCTCGCCGGTCAAGGCCTTCTTCACCGTCGTCGTGCCGGCGCTGCGCAACACCATCGTCGCGACCTTGATCATGGTCTTCATCTTCGCGCTCGGCTCCTACCTGCTGCCGCAGATCCTCGGCCGGCCGCAGCACTGGACGCTCTCGGTGCTCATCACCGACCAGGCGATCTACCAGTCGAACATGCCCTTCGCCGCCGCCATGGCCGTCTTCCTCGTGCTCGTCACGCTCGGCCTCGTCGCGCTCACCGTCTATGCCGGCCGCAAGGGGGAAGCCGCATGA
PROTEIN sequence
Length: 285
MRREAPQKLSDYGPLVFPAGMLIVFFVVPFATMIAVSFFKRDPAGFYSADFVFDNYARFLSLFFGKVLGFSLFLAIAVAICCVVLAVPFTYLLSRAGRHAQVLWLVALLSVLSLSEVIIGFAWSTLFSRTAGITNILVALGILKEAVALNPSFGAVLTAMVYQALPYTVLVLYPALVRLDPTLTEAARTLGASPVKAFFTVVVPALRNTIVATLIMVFIFALGSYLLPQILGRPQHWTLSVLITDQAIYQSNMPFAAAMAVFLVLVTLGLVALTVYAGRKGEAA*