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SCNpilot_expt_1000_bf_scaffold_4305_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2927..4015

Top 3 Functional Annotations

Value Algorithm Source
Extracellular solute-binding protein, ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EH24_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 362.0
  • Bit_score: 694
  • Evalue 5.10e-197
  • rbh
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EYR77372.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 362.0
  • Bit_score: 694
  • Evalue 7.20e-197
Extracellular solute-binding protein, ABC transporter similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 356.0
  • Bit_score: 631
  • Evalue 2.20e-178
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1089
ATGCGTGACATCCTCAAGACCAATGTCAGCCGCCGCGCCGTGCTGGGTGCGGGCGTTGCCGGCGCCTCGCTGCTCGCCATGCCGGCGGTCATGCGCGCGCAGGACAAGTCGCTGAAGGTCGGCGTCTACGGCGGCTACTTCAAGGATTCCTTCGACAAGAACATCTTCGCGGACTTCACCAAGGAAACGGGCATCGCCGTGGAATCGGTCGCCGAGCCGACCGGCGAGGCCTGGCTCGTCCAGCTCGAACAGGCCGCCCGCGCCGGCCAGGCCCCGGCCGACGTCTCGATGATGTCGCAGGTCGCCATGCTCAAGGGCCAGTCGACGGAGCTCTGGGCGCCGCTCGACGTGTCGAAGATCCCGAACGCGTCGAACCTCATCGACCATTTCGTCAACAAGTATCCGGACGGCCGCGTCGCCGGCATCGGGGCCGTTGCCTGGTACATCACGCTCGTCACCAACACCAATGTCTATCCCGAGCCGCCGACCTCCTGGGCCGCGCTCTGGGATCCGGCGAACGCCGACAAGCTCGGCTTGCTGGCGCTCGTCTCCAACTCCTTCCTGCTGGAAGTGACGGCCAAGACCCATTTCGGCGGCACGAACGCGCTCGATACCGAGGAAGGTCTCCTCAAGGCCTTCGAGAAGCTCGCCGAGGTGAAGCCGAACGTCCGCCTCTGGTATCGCGACGAGGCGCAGTTCGAGCAGTCGCTGAAGTCCGGCGAAATCCCGATGGGCCAGTACTACCACGACGTGACGGGCCTTGCCGCCAAGGACGGCCAGCCGGTCCGCTCCACCTTCCCGAAGGAAGGCGGCATCATGGATTCGGGCTGCTGGGCGCTGTCGCGCGCTTCGAGCAAGGTCGAGGAGGCGCACACCTTCATCAACTACATGAGCCAGCCGTCGATCCAGGCGCTGCTGTCGCGCAAGGTCGGCACCGCGCCGACCGTCAAGCGCGACCTGCTCGACCTGACGGCCGAGGAGTTCGCCGCCGTCTCCTCCGACATCGAGCCGATCATCCCGCGCTACGATCTCTACACCTCGAAGGCCGACTGGCTGAACCAGAAGTGGACGGAAATGATCGCGGGCTGA
PROTEIN sequence
Length: 363
MRDILKTNVSRRAVLGAGVAGASLLAMPAVMRAQDKSLKVGVYGGYFKDSFDKNIFADFTKETGIAVESVAEPTGEAWLVQLEQAARAGQAPADVSMMSQVAMLKGQSTELWAPLDVSKIPNASNLIDHFVNKYPDGRVAGIGAVAWYITLVTNTNVYPEPPTSWAALWDPANADKLGLLALVSNSFLLEVTAKTHFGGTNALDTEEGLLKAFEKLAEVKPNVRLWYRDEAQFEQSLKSGEIPMGQYYHDVTGLAAKDGQPVRSTFPKEGGIMDSGCWALSRASSKVEEAHTFINYMSQPSIQALLSRKVGTAPTVKRDLLDLTAEEFAAVSSDIEPIIPRYDLYTSKADWLNQKWTEMIAG*