ggKbase home page

SCNpilot_expt_1000_bf_scaffold_16359_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(478..1389)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, RpiR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLY1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.4
  • Coverage: 302.0
  • Bit_score: 549
  • Evalue 2.90e-153
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EYR84417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.4
  • Coverage: 302.0
  • Bit_score: 549
  • Evalue 4.10e-153
RpiR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 68.0
  • Coverage: 294.0
  • Bit_score: 384
  • Evalue 2.30e-104

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 912
ATGCCAAGAGTGAAACAATCGGATCAGCCGCCGCCGCGAACAGCAAACTACGAAACATTCGTGAATATCGTAACGGAGGCCTATCCGGAGTTGAGTGATCGATTCCAGCAGGTCGCTCGCTACATCACGCAAAATCCCAATGTCGTGGCGATGCAATCGATCAACTTCATTGCAGATGAGTGCGGTGCGCACCCTTCGATCCTTGTGCGTTTTGCCCAGCATTTTGGATTTTCGGGTTTCAAGCAGCTTCAGACGGTTTTCCAGAGCCGTCTGTCGACGGCCGCACCCGGCTACCGGGAGCGGATCAGCGCGCTTGACGTCGACTTGGAAAAGAACAAGCGCAAGGGCAATCTCGGCTTCCTCCACGATCTGGTCGTGCGGGACATTGCGACCTTGCAGGAACTGCTGAACGTAACGACGGAGGAAAGCCTCGCACAGGCCGCCCGCGCGCTGAAGAACGCCAACACGATCTTCATCGCAGGCCAGTTGCGTTCGGAGCCGATCGCGAAATTCCTGCGCTACGTTCTGTCGATGCTGCAATGTCGGGTCATTCTTCTCGATCCCGCCGGCGGCCTTGCGCCGGAAATGGCGCAGGTCATGAACAAGAAGGACGTGCTCGTCGCCATCGCATTCAGGCACTACGCCAAGGAGGTGGTGGCGATCGCCGACGTCGCCGCGCAGAACGGGACCCCCATGGTGGCGATCACCGACAGCCAGCTTTCGCCGCTCGCCAAGAATGCCAGCGTGCTTTTCTCCATTCCGGAGGATGAGTATTCGTTCTCGCGTTCGCTTGCGGCGCCGATGTGCCTGACGCAGGCGATCGCGGTGGCGCTTGCCGCGCTGCTTCAGGACGACAAGAAGGGGTTGCCGAAGATCCCGACGGTTACGGGCAACCAGCGCCGCAAACCGTGA
PROTEIN sequence
Length: 304
MPRVKQSDQPPPRTANYETFVNIVTEAYPELSDRFQQVARYITQNPNVVAMQSINFIADECGAHPSILVRFAQHFGFSGFKQLQTVFQSRLSTAAPGYRERISALDVDLEKNKRKGNLGFLHDLVVRDIATLQELLNVTTEESLAQAARALKNANTIFIAGQLRSEPIAKFLRYVLSMLQCRVILLDPAGGLAPEMAQVMNKKDVLVAIAFRHYAKEVVAIADVAAQNGTPMVAITDSQLSPLAKNASVLFSIPEDEYSFSRSLAAPMCLTQAIAVALAALLQDDKKGLPKIPTVTGNQRRKP*