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SCNpilot_expt_1000_bf_scaffold_16359_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16359_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..434
DNA (432bp) protein (144aa)
Inositol 2-dehydrogenase IdhA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C652_9RHIZ
Inositol 2-dehydrogenase IdhA {ECO:0000313|EMBL:EYR84418.1}; EC=1.1.1.18 {ECO:0000313|EMBL:EYR84418.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
NAD-binding glucose/fructose oxidoreductase Rossman fold family protein (EC:1.1.1.18)
SCNpilot_expt_1000_bf_scaffold_16359_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(478..1389)
DNA (912bp) protein (304aa)
Transcriptional regulator, RpiR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLY1_9RHIZ
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EYR84417.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_16359_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1569..3122)
DNA (1554bp) protein (518aa)
chemotaxis protein n=1 Tax=Rhizobium gallicum RepID=UPI00035D1031
Chemotaxis protein {ECO:0000313|EMBL:AHF87246.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
mcpZf1; methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_16359_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3122..4090)
DNA (969bp) protein (323aa)
chemotaxis protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003819B4C
mcpZf1; methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGS26340.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_16359_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4202..5149)
DNA (948bp) protein (316aa)
D-ribose-binding protein RbsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW07_9RHIZ rbh
ABC-type sugar transport system periplasmic component RbsB {ECO:0000313|EMBL:EYR84416.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC ribose transporter, periplasmic solute-binding protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_16359_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5185..6201)
DNA (1017bp) protein (339aa)
Ribose transport system permease protein RbsC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRD7_9RHIZ rbh
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR84415.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inner-membrane translocator; K10440 ribose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_16359_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6198..7418)
DNA (1221bp) protein (407aa)
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENQ3_9RHIZ rbh
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EYR84414.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR84414.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
Displaying 7 items

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