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SCNpilot_expt_1000_bf_scaffold_16359_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4202..5149)

Top 3 Functional Annotations

Value Algorithm Source
D-ribose-binding protein RbsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW07_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.7
  • Coverage: 315.0
  • Bit_score: 597
  • Evalue 7.40e-168
  • rbh
ABC-type sugar transport system periplasmic component RbsB {ECO:0000313|EMBL:EYR84416.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.7
  • Coverage: 315.0
  • Bit_score: 597
  • Evalue 1.00e-167
ABC ribose transporter, periplasmic solute-binding protein; K10439 ribose transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 53.2
  • Coverage: 316.0
  • Bit_score: 359
  • Evalue 1.40e-96
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 948
ATGCTCAACACACTGAAATCGCTCGTGGCGGCCGGTGCCGTCGCCATCATCGGGCTGGCATCGCCGGCGCTCGGCGCCGATGCCTTGATCGGCGTGTCCATTCCGGCGGCGACGCACGGCTGGACCGGCGGTCTCAACTACCACACCAAGCGCACGATCGACCGGATGCAAGAAGCCTTCCCGAATATCGATTTCGTGCTGGNNNNNNNNNNNNGTGCCACACAGCAGGTCAACGACATCGAGGATCTGATGGCGCGCAACATCAACGCGCTCGTCGTGCTGCCCTTCGAATCCGATCCGCTGACCGAGCCGGTCAAGGCGGCAAAGGCCAAGGGCGTCTTCATCGCCACCGTCGACCGCGGCCTTGCGGAAGAAGGCATCGAGGACCTCTATGTCGGCGGCGACAACCCGCAATACGGCACGGCGGCGGCCGAATACTTCAAGAAGAAGTTCCCGGACGGCGGCAAGATCGTCGTGATGCGCGGCATTCCGACGGCGATCGACAATATCCGCATCGACGCCTTCAACGCGGCGCTGAAGGATACCAAGATCGAAGTCCTCGACATGCAATATGCCAACTGGAACCCGGACAAGGGCTTCGAGGTCATGCAGGATTACCTGCAACGCTTCCCTGAGATTGACGGCGTGTGGGCCGGCGACGACGATGCGGCGCTCGGCGCCATCGAGGCGATCAAGCAGGCCGACCGCAAGAATGTCACGGTGCTTGGCGGCTCGGGTATGAACAAGGTCATCAAGCTCGTCATGGACGGCCATGACATGGTCGATGCCGACATCTTCTACCCGCCGACGCTGATCATCCCGGCCATCGAGCTCGTCACGATGAAATATGCGACCCAGGCCCCGATCAACGGCCGCTACGTGCTCGGCAGCCCGCTGATCACCAAGGACAACGCCGCAGAATACTACTTCCCCGACGCTCCGTATTGA
PROTEIN sequence
Length: 316
MLNTLKSLVAAGAVAIIGLASPALGADALIGVSIPAATHGWTGGLNYHTKRTIDRMQEAFPNIDFVLXXXXXATQQVNDIEDLMARNINALVVLPFESDPLTEPVKAAKAKGVFIATVDRGLAEEGIEDLYVGGDNPQYGTAAAEYFKKKFPDGGKIVVMRGIPTAIDNIRIDAFNAALKDTKIEVLDMQYANWNPDKGFEVMQDYLQRFPEIDGVWAGDDDAALGAIEAIKQADRKNVTVLGGSGMNKVIKLVMDGHDMVDADIFYPPTLIIPAIELVTMKYATQAPINGRYVLGSPLITKDNAAEYYFPDAPY*