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SCNpilot_expt_1000_bf_scaffold_16359_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6198..7418)

Top 3 Functional Annotations

Value Algorithm Source
Ribose import ATP-binding protein RbsA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENQ3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.1
  • Coverage: 405.0
  • Bit_score: 679
  • Evalue 1.90e-192
  • rbh
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:EYR84414.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR84414.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.1
  • Coverage: 405.0
  • Bit_score: 679
  • Evalue 2.70e-192
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] similarity KEGG
DB: KEGG
  • Identity: 51.9
  • Coverage: 399.0
  • Bit_score: 384
  • Evalue 5.20e-104

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1221
AACGTCTTCCTCGGCCGCGAGCTGACGCGCGGCCTCTTCACCGACCGCAAGGCGATGGAGGTGAAGGCGCGCGCGCTTCTCGCCGAACTCGGCTCGGCCGCCCCCGTGAGGGCACGGCTTCGCGACCTGCCGGTCTCCGACTGGCAGATGATCGAGCTTGCGAAAGCCTTCGCCCGCCAGCCGAAGCTCATCCTGATGGACGAGCCGACCGCCGTCCTCTCCGCCACCGAGGCCGGCAATCTCTTTACCCGCATCCGCGCCTTCCGTAAGAGCGGCGGCTCGGTGATCTTCACCTCGCACCGCCTCGATGAGGTCAAGGCCATTGCCGACCGCGTCGCGGTGCTGCGCGACGGCCAGATCGTGCGGGTGGAGAAGACGAGCGCCATTTCCGAGAACGAGATGGCCGAGGCCATGGTCGGCCGGCCGCTGGCGGAGATCTATCCGTCCCGCCGTGGCGCGGCGCCGCGCAAGGCGTTCCTCAGCGTTACCGGCCTGTCCGCGCCGGGCGCCGTGGAGGATGCCTCGCTCGATATCCGCGAGGGCGAGGTGCTCGGCATTTCCGGCCTCGTCGGCTCGGGCCGCACGGAGCTCTTCGAGGCGCTGCTCGGCCTTCGCCCGGCGAAATGCCGCTCCTTCGTGCTGCGCGGCAGGGAACGCCGGCTGCCGGCGGCGCGCGAGGCCTGGGCGCTGAAGCTCGCCTATCTGACGGAAGACCGCAAGGGCAAGGGCCTGCTGCTGGCCAAGCCGCTCGACCAGAACGTCGCGCTGACGAGGGGCGCCATCGCCGGGGCCGCATGGATCGACCGGCGGGCGGAGCGGCGTGATCTGGAGGCGGCGGTCGAGCGCTACGACATCCGCGCCGGCCGGCTGGACGTGACGGCGGGGGCGCTCAGCGGCGGCAACCAGCAGAAGGTGCTGATCGCCAAGACGCTCGGTGTCGAGCCGGACCTCGTCGTCTTCGACGAACCGACGCGCGGCGTCGACATCGGCGCCAAGCAGCAAATCTACGAGATCATCGCGGGGCTTGCCGCCGAGGGCAAGGCCATCGTCGTCATTTCCTCGGAAATGCAGGAGATCGTCGGCCTTTCCGACCGGGTGCTCGTCATGCGCCGCGGGCGCATCGCCGGCGAGCTTTCGGGCGACGCCATCACCGAGAACGACATCATCCGATTTGCCATGGGCCTTGAAGAGGCAAGTCCACAGGAGGAGGCAAGCCATTGA
PROTEIN sequence
Length: 407
NVFLGRELTRGLFTDRKAMEVKARALLAELGSAAPVRARLRDLPVSDWQMIELAKAFARQPKLILMDEPTAVLSATEAGNLFTRIRAFRKSGGSVIFTSHRLDEVKAIADRVAVLRDGQIVRVEKTSAISENEMAEAMVGRPLAEIYPSRRGAAPRKAFLSVTGLSAPGAVEDASLDIREGEVLGISGLVGSGRTELFEALLGLRPAKCRSFVLRGRERRLPAAREAWALKLAYLTEDRKGKGLLLAKPLDQNVALTRGAIAGAAWIDRRAERRDLEAAVERYDIRAGRLDVTAGALSGGNQQKVLIAKTLGVEPDLVVFDEPTRGVDIGAKQQIYEIIAGLAAEGKAIVVISSEMQEIVGLSDRVLVMRRGRIAGELSGDAITENDIIRFAMGLEEASPQEEASH*