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SCNpilot_expt_1000_bf_scaffold_6761_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..335)

Top 3 Functional Annotations

Value Algorithm Source
HTH-type transcriptional regulator PetP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCG0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.8
  • Coverage: 111.0
  • Bit_score: 208
  • Evalue 3.40e-51
Transcriptional regulator {ECO:0000313|EMBL:EYR79027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 111.0
  • Bit_score: 208
  • Evalue 4.80e-51
Transcription regulator MarR family similarity KEGG
DB: KEGG
  • Identity: 75.7
  • Coverage: 111.0
  • Bit_score: 160
  • Evalue 4.40e-37

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 333
ATGAAAGGAAATGACAACGTGGCCCGACAGATGCCGGAGAAAATCGGCGAGACCGCGCTGCACGAGGACGCCATGACGGGTGACGGCCGCATCGACTTCGAGATCATCGAGGGCCTGTTCTTCGCCTATCGCGACTTCATTTCCGATCCGGACGCCATTCTGGAAAAGAGCGGCTTCGGCCGCGCCCACCACCGCGTCGTCCACTTCGTCAACCGCGAGCCCGGCATGACCGTCGCCGACCTGCTCGACACGCTGAAGATCACCAAGCAGAGCCTCGCCCGCGTCTTGAAGCAGCTCATCGATTCCGGCTATATCCAGCAGGTGGCAGGCCCC
PROTEIN sequence
Length: 111
MKGNDNVARQMPEKIGETALHEDAMTGDGRIDFEIIEGLFFAYRDFISDPDAILEKSGFGRAHHRVVHFVNREPGMTVADLLDTLKITKQSLARVLKQLIDSGYIQQVAGP