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SCNpilot_expt_1000_bf_scaffold_6761_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6761_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..335)
DNA (333bp) protein (111aa)
HTH-type transcriptional regulator PetP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCG0_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR79027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcription regulator MarR family
SCNpilot_expt_1000_bf_scaffold_6761_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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575..1465
DNA (891bp) protein (297aa)
Putative branched-chain-amino-acid aminotransferase IlvE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERD6_9RHIZ rbh
Putative branched-chain-amino-acid aminotransferase IlvE {ECO:0000313|EMBL:EYR79028.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EYR79028.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
SCNpilot_expt_1000_bf_scaffold_6761_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1527..1796)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTU0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79029.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_6761_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2042..3145)
DNA (1104bp) protein (368aa)
4-hydroxyphenylpyruvate dioxygenase Hpd {ECO:0000313|EMBL:EYR79031.1}; EC=1.13.11.27 {ECO:0000313|EMBL:EYR79031.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] rbh
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Nitratireductor indicus C115 RepID=K2NTU3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6761_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3275..3733
DNA (459bp) protein (153aa)
Transcriptional regulator {ECO:0000313|EMBL:EYR79032.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DH39_9RHIZ
transcriptional regulator AsnC-type-like protein
SCNpilot_expt_1000_bf_scaffold_6761_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3871..4035
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERE9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79033.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6761_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4110..4751
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTV0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ycbL; hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6761_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5403..5618)
DNA (216bp) protein (72aa)
Cold shock protein CspA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPD1_9RHIZ
Cold shock protein CspA {ECO:0000313|EMBL:EYR79036.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cspA; cold shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_6761_curated_9
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6033..6935)
DNA (903bp) protein (301aa)
hypothetical protein rbh
Uncharacterized protein n=8 Tax=Rhizobium meliloti RepID=F6BWI6_SINMB rbh
Putative transmembrane protein {ECO:0000313|EMBL:AGG74921.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_expt_1000_bf_scaffold_6761_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7021..8190)
DNA (1170bp) protein (390aa)
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:EYR79037.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glucose dehydrogenase rbh
Putative glucose dehydrogenase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MFI1_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_6761_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8273..8473)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHE0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79038.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6761_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8650..9558)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF88_9RHIZ rbh
EAL domain-containing protein {ECO:0000313|EMBL:EYR79039.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6761_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9887..11089
DNA (1203bp) protein (401aa)
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EYR79040.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate aminotransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035CB516 rbh
aatA3; aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
SCNpilot_expt_1000_bf_scaffold_6761_curated_14
unknown

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11770..12072
DNA (303bp) protein (101aa)

This feature has no annotations

Displaying 14 items

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