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SCNpilot_expt_1000_bf_scaffold_3602_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 1402..2193

Top 3 Functional Annotations

Value Algorithm Source
Formate dehydrogenase {ECO:0000313|EMBL:KEA08348.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.5
  • Coverage: 259.0
  • Bit_score: 432
  • Evalue 3.70e-118
formate dehydrogenase alpha chain protein; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] similarity KEGG
DB: KEGG
  • Identity: 81.1
  • Coverage: 259.0
  • Bit_score: 431
  • Evalue 1.90e-118
  • rbh
Formate dehydrogenase alpha chain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP26_AGRRK similarity UNIREF
DB: UNIREF100
  • Identity: 81.1
  • Coverage: 259.0
  • Bit_score: 431
  • Evalue 5.90e-118
  • rbh

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 792
GTGCATGGGCGTGACGCGCTGATCCTGCCGGTCGTCGCCCGTTCGGAATGGATACGCACGAAGGCGGGCGAGCAGTTCGTCACCATCGAGGACGCCATGTCGAACGTCACGGCATCGCGCGGCGTGCTGACGCCGGCAAGCCCGCAGGTGATGTCGGAAGTGGAGATCGTCTGCCGCATGGCGATGGCCGCGCTGCCGGACAGCAAGGTGTCCTGGGCGCGCTACATCGACAACTACGACCTCATCCGCGACAAGATCGCCGAGGTCTATCCGGACATCTATGCCGGCTTTTCCGAACGGGTCAAAAACCCGAAGGGTTTCCATCTCGACATACCGCCGCGCCGGCGCGTCTGGCCGACAGAGAACGGAAAGGCGAATTTCCTGCTGATGCCGGGGCTGGAGGTGAATGATGTCGTCGACGATCCCGAGATGCTGCGGCTCGCCACGGTGCGCTCGCACGATCAGTTCAATACGACCATCTACAGCAACAACGACCGCTATCGTGGCGTCTATAACGACCGCATGGTGCTGTTCATGAATGCCGAGGACCTGGCTATGCGGGGGCTCGCCTCCGGTGCACGGATCGCGCTGGAAACCATCAGCACGGACGGCATGACACGGCGTGTCGAAGGGCTGACGGCGCTCGACTATCCGATGCCGCGCGGTGCGGTCGCCGGCTATTATCCGGAACTCAACCCGCTGCTGCCGCTGGATTATTACGACCGGATCAGCGGCACGCCGGCGGCGAAATCCATACCTGTGCGGGTAATCGCCGGAGAACCGGCAGTCTGA
PROTEIN sequence
Length: 264
VHGRDALILPVVARSEWIRTKAGEQFVTIEDAMSNVTASRGVLTPASPQVMSEVEIVCRMAMAALPDSKVSWARYIDNYDLIRDKIAEVYPDIYAGFSERVKNPKGFHLDIPPRRRVWPTENGKANFLLMPGLEVNDVVDDPEMLRLATVRSHDQFNTTIYSNNDRYRGVYNDRMVLFMNAEDLAMRGLASGARIALETISTDGMTRRVEGLTALDYPMPRGAVAGYYPELNPLLPLDYYDRISGTPAAKSIPVRVIAGEPAV*