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SCNpilot_expt_1000_bf_scaffold_3602_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3602_curated_1
unknown

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comp(3..212)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3602_curated_2
unknown

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comp(420..863)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI00037F69B0
SCNpilot_expt_1000_bf_scaffold_3602_curated_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1402..2193
DNA (792bp) protein (264aa)
Formate dehydrogenase {ECO:0000313|EMBL:KEA08348.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
formate dehydrogenase alpha chain protein; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] rbh
Formate dehydrogenase alpha chain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP26_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_3602_curated_4
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2270..3199
DNA (930bp) protein (310aa)
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:KEA08347.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Cytochrome bd ubiquinol oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase, subunit I n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP27_AGRRK
SCNpilot_expt_1000_bf_scaffold_3602_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3217..3780
DNA (564bp) protein (188aa)
grpE; molecular chaperone heat shock protein (hsp-70)
Protein GrpE n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP31_AGRRK
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3602_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3777..4319)
DNA (543bp) protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:GAJ93457.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
mechanosensitive ion channel protein
Mechanosensitive ion channel protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP32_AGRRK
SCNpilot_expt_1000_bf_scaffold_3602_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4370..4654)
DNA (285bp) protein (95aa)
Uncharacterized protein {ECO:0000313|EMBL:GAJ93458.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
moeA; molybdopterin biosynthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdopterin biosynthesis protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP33_AGRRK
SCNpilot_expt_1000_bf_scaffold_3602_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4718..6823
DNA (2106bp) protein (702aa)
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dnaK; chaperone protein (Heat shock protein 70); K04043 molecular chaperone DnaK rbh
Chaperone protein DnaK n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP34_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_3602_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6924..7826
DNA (903bp) protein (301aa)
Curved DNA-binding protein CbpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNW4_9RHIZ rbh
Curved DNA-binding protein CbpA {ECO:0000313|EMBL:EYR84576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaJ; DNAJ molecular chaperone protein rbh
SCNpilot_expt_1000_bf_scaffold_3602_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7829..8089
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTP0_9RHIZ
MerR HTH family regulatory protein {ECO:0000313|EMBL:EYR84577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3602_curated_11
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8147..9526
DNA (1380bp) protein (460aa)
Fis family transcriptional regulator {ECO:0000313|EMBL:KEA08339.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
two-component response regulator protein rbh
Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP38_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_3602_curated_12
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11798..12769
DNA (972bp) protein (324aa)
ATPase AAA n=1 Tax=Methylocystis rosea RepID=UPI0003784FCB
clpB; chaperone protein ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034, ECO:0000313|EMBL:CCJ06273.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_3602_curated_13
unknown

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comp(12622..12915)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3602_curated_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13118..13312
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NFR7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27826.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3602_curated_15
unknown

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comp(13250..13366)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3602_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14398..14703
DNA (306bp) protein (102aa)
Linocin-M18 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84580.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative bacteriocin protein
Displaying 16 items

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