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SCNpilot_expt_1000_bf_scaffold_4376_curated_18

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(18243..19124)

Top 3 Functional Annotations

Value Algorithm Source
agpT; AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 290.0
  • Bit_score: 229
  • Evalue 1.20e-57
Transcriptional regulator AraC family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3G5_AGRVS similarity UNIREF
DB: UNIREF100
  • Identity: 43.1
  • Coverage: 290.0
  • Bit_score: 229
  • Evalue 3.80e-57
Transcriptional regulator AraC family {ECO:0000313|EMBL:ACM39413.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.1
  • Coverage: 290.0
  • Bit_score: 229
  • Evalue 5.30e-57

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Taxonomy

Agrobacterium vitis → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 882
ATGCCGCACGCCGATTCGCTCGAGCTCGAATTTCGCCAACCCGAGGCCGCGCCCGTCACCAGCCGCTCCTCGCAGTGTCGCGGCGTGCAGGTCGAATTCTCGCGCCTGCGCCTGCCGGCCGAATACGAATTCGCCTGGAACGGGTCGACGCACTATCTCGCGCTGCACGACCTTATTCTGGCGGATGGCGAAATGCGCGTGGATGACCTTCCCCCCACCCCCGGCGGCGACCTGCGAAACAGGATGACCTTCGTTCCGGCGGCGTGCGGGCTGCGCGGATGGGCCAGGCCCGTACCGCGCCAGAACACGTTCACCGTGGTTTACTTCGATCCGGCCGTCCTCGAACAGGAACTGCAGGTCGAAGGCGCGGCGGCGGCGCCGAGCCCGCACATCTACTTCAACGAGCCGGATTTGCTGGCGACGATGAAAAAGCTCGAGGGCGCGATGTCCGGCGCGGATTCGGCATCGACGCTCTATGCCGAGACGCTCGGGCTTGTCGCCGCGCTCGAAATGTTCCGCTTCCAGAGCGCATTGGAAAAACGACAGCCGCGACCCGGCACGCTCACCGCGGCCCAGCAGCGTGTGGTGCAGGATTTCATCGAGGACAATCTGGGCACCGACTTCGGGCTGGACGCCCTCGCATCCATCGCCGGCCTCAGCCGCTATCATTTCAGCCGCAGCTTCAAGGCAACGTTCGGAATGCCGCCCCACCGCTTCGTGACGGGACGCAGGATCGACAAGGCGCGCCAACTGCTGGCGCAGCCCCACATGTCGATCGCCGACATCGCATCGGGAACCGGGTTCAACAGCGTCGCCAATTTCAGCCGCACGTTCCGTGAACTGCACGGCATGACCCCAAGCGATTTCAGGCGCAGCGCGTAG
PROTEIN sequence
Length: 294
MPHADSLELEFRQPEAAPVTSRSSQCRGVQVEFSRLRLPAEYEFAWNGSTHYLALHDLILADGEMRVDDLPPTPGGDLRNRMTFVPAACGLRGWARPVPRQNTFTVVYFDPAVLEQELQVEGAAAAPSPHIYFNEPDLLATMKKLEGAMSGADSASTLYAETLGLVAALEMFRFQSALEKRQPRPGTLTAAQQRVVQDFIEDNLGTDFGLDALASIAGLSRYHFSRSFKATFGMPPHRFVTGRRIDKARQLLAQPHMSIADIASGTGFNSVANFSRTFRELHGMTPSDFRRSA*