ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4376_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4376_curated_1
unknown

Not on your lists

979..1404
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_curated_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1327..2130)
DNA (804bp) protein (268aa)
Polyamine ABC transporter permease {ECO:0000313|EMBL:KJC45104.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
polyamine ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000375ECC4
ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4376_curated_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2135..2767)
DNA (633bp) protein (211aa)
Polyamine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM33521.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
binding-protein-dependent transport system inner membrane protein
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036CAC63
SCNpilot_expt_1000_bf_scaffold_4376_curated_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3339..4184)
DNA (846bp) protein (282aa)
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM32537.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Novispirillum itersonii RepID=UPI00035F33E7 rbh
Extracellular solute-binding protein, family 1 rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4417..5529)
DNA (1113bp) protein (371aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUP9_9RHIZ rbh
potA9; Spermidine/putrescine import ATP-binding protein PotA (EC:3.6.3.31) rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_6
unknown

Not on your lists

comp(5563..5703)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_curated_7
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

5714..6574
DNA (861bp) protein (287aa)
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
Uncharacterized protein n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SJZ0_9RHOB
SCNpilot_expt_1000_bf_scaffold_4376_curated_8
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7363..8853
DNA (1491bp) protein (497aa)
Carnitine dehydratase {ECO:0000313|EMBL:KJE52541.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037189EC rbh
aldehyde dehydrogenase family protein rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_9
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8905..9795
DNA (891bp) protein (297aa)
LysR family transcriptional regulator {ECO:0000313|EMBL:KJK13136.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
LysR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S8S1_9BURK
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4376_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10156..10677
DNA (522bp) protein (174aa)
regulatory protein MarR
Transcriptional regulator, MarR family n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J2_RHOPS
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE39997.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10674..11450
DNA (777bp) protein (259aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J3_RHOPS rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE39996.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11472..11813
DNA (342bp) protein (114aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q136J4_RHOPS
Uncharacterized protein {ECO:0000313|EMBL:ABE39995.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_4376_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11974..12366)
DNA (393bp) protein (131aa)
ArsR family transcriptional regulator {ECO:0000313|EMBL:KGD96966.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
regulatory protein ArsR
SCNpilot_expt_1000_bf_scaffold_4376_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12434..13726
DNA (1293bp) protein (431aa)
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase rbh
Sulfide-quinone oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FZ7_MESSB rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13757..13960
DNA (204bp) protein (68aa)
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfurtransferase n=1 Tax=Methyloferula stellata RepID=UPI0003800316
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4376_curated_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13980..14993
DNA (1014bp) protein (338aa)
membrane fusion protein rbh
Membrane fusion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZW8_9RHIZ rbh
Membrane fusion protein {ECO:0000313|EMBL:AGK56744.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4376_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14990..18196
DNA (3207bp) protein (1069aa)
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ rbh
acriflavin resistance protein rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_18
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18243..19124)
DNA (882bp) protein (294aa)
agpT; AraC family transcriptional regulator
Transcriptional regulator AraC family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3G5_AGRVS
Transcriptional regulator AraC family {ECO:0000313|EMBL:ACM39413.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_4376_curated_19
unknown

Not on your lists

19462..19695
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_curated_20
unknown

Not on your lists

19824..19919
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_curated_21
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20057..20791
DNA (735bp) protein (245aa)
DNA-binding protein with HTH domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BL80_9RHIZ rbh
DNA-binding protein with HTH domain-containing protein {ECO:0000313|EMBL:EJL53731.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
regulatory protein luxr; K07782 LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4376_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..21750
DNA (519bp) protein (173aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR78521.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003808CF3
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4376_curated_23
unknown

Not on your lists

comp(21687..21956)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4376_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22084..23940
DNA (1857bp) protein (619aa)
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78522.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Two component sensor kinase/response regulator hybrid n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYL0_9RHIZ rbh
two component sensor kinase/response regulator hybrid rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23951..25063
DNA (1113bp) protein (371aa)
Response regulator {ECO:0000313|EMBL:EYR78523.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Response regulator protein; K07814 putative two-component system response regulator rbh
Response regulator protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JQV8_AGRVS rbh
SCNpilot_expt_1000_bf_scaffold_4376_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25369..26514
DNA (1146bp) protein (382aa)
methyl-accepting chemotaxis sensory transducer with Cache sensor; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis sensory transducer with Cache sensor n=8 Tax=Rhizobium meliloti RepID=F6BMR9_SINMB
Chemoreceptor methyl-accepting chemotaxis transmembrane protein {ECO:0000313|EMBL:CDH85883.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
Displaying 26 items

View Taxonomy