ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4376_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3339..4184)

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM32537.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.2
  • Coverage: 281.0
  • Bit_score: 318
  • Evalue 1.10e-83
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Novispirillum itersonii RepID=UPI00035F33E7 similarity UNIREF
DB: UNIREF100
  • Identity: 50.5
  • Coverage: 281.0
  • Bit_score: 314
  • Evalue 1.10e-82
  • rbh
Extracellular solute-binding protein, family 1 similarity KEGG
DB: KEGG
  • Identity: 51.6
  • Coverage: 279.0
  • Bit_score: 311
  • Evalue 3.90e-82
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Inquilinus limosus → Inquilinus → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 846
TTGCGCACCCGCATCCGCAGCAGCAACAACACTTGGGATGTCGTGCAGGTCGAGGCTGAAGAAGCCGCGATCGGGTGTGAGGAAGGCCTCTTCGAACGGATCGACCTGAGCATGGTCGGCGGCGCTGACCGTTTCCTGCCGGGCACCACCCGTGAATGCAGCGTCGGCGCGGTCATCTACAACGTCGTTCTCGCATATGACGCATCCAAGGAAGGCAAAAAGCCCGAAAGCTGGGCCGACTTTTTCGATGTCAAGACGTTTCCCGGCAAGCGCGCGGTACGCAACGGTCCCAAATGGAATCTGGAAATAGCGCTTCTTGCCGACGGCGTTCCGCCTGACCAGCTATACAAGGTGCTTTCCACGCTCGAAGGTGTCGACCGCGCCTTTGCAAAGTTCGATTCCATCAAGTCGGACCTGCTTTTCTGGAAGTCGGGTGCGCAACCGAAGCAGATGCTGGCTGCCGGCGACGTGGTTATGAGCACCACGTTCAACTCTCGCATTACGGCTTCAAACGAGAATGACGGGACCAATTTCGGCATCGTCTGGAATGGCTCGATCTTCACGATGGACAGTTGGGTCGTCATGAAAGGCACCCCCATGCTGGCGGAAAGCCTGAAGCTGATCGAGTTCATGACGCGCGCCAAGGAGCAGGCGGCGATTGTTCCGTTGAATCGCACCGGCCCCACCAACAAGAGCGCGATCGCGGAAATCCCGTCGCGATACCTGGCGGACCTGCCGTCCAATCGGGCCAACCTGGAGGTGTCGGTGCCGGACGACCCCGAGTTCTGGATCGACAATTTCGACGACCTCAACGAACGCTGGTCCGCCTGGGCCGGAAACAACTGA
PROTEIN sequence
Length: 282
LRTRIRSSNNTWDVVQVEAEEAAIGCEEGLFERIDLSMVGGADRFLPGTTRECSVGAVIYNVVLAYDASKEGKKPESWADFFDVKTFPGKRAVRNGPKWNLEIALLADGVPPDQLYKVLSTLEGVDRAFAKFDSIKSDLLFWKSGAQPKQMLAAGDVVMSTTFNSRITASNENDGTNFGIVWNGSIFTMDSWVVMKGTPMLAESLKLIEFMTRAKEQAAIVPLNRTGPTNKSAIAEIPSRYLADLPSNRANLEVSVPDDPEFWIDNFDDLNERWSAWAGNN*