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SCNpilot_expt_1000_bf_scaffold_4376_curated_21

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 20057..20791

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding protein with HTH domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BL80_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 63.8
  • Coverage: 243.0
  • Bit_score: 310
  • Evalue 1.40e-81
  • rbh
DNA-binding protein with HTH domain-containing protein {ECO:0000313|EMBL:EJL53731.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.8
  • Coverage: 243.0
  • Bit_score: 310
  • Evalue 2.00e-81
regulatory protein luxr; K07782 LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 33.0
  • Coverage: 221.0
  • Bit_score: 113
  • Evalue 1.40e-22

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Taxonomy

Rhizobium sp. CF122 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 735
ATGTCGATCAGCGCGCTTTCCATGGTCGCGCCCAATGCCCTGGACGATTTCTGCGACCTGCAGTCCGTGCCCGTGCACCGTCATTTCGGTCGCAACGAGATCGTCGACCGGTTCCGCCGTTCCGTCCCGTTCGATTACATCATCATCAGCGGCCTGGATGTCGATGGCTACCGCTTCGGCAAGGGGCATTCGATCGATACGGATCTGCCGCCCGCTTTCATGGAAAGCTACGCCGCAGATGCCCTCTCGCAGTCCGACCCCTTCGTGATCGCGGCGAAGACCTCCTTCACGAGGACCGAGGAGAAGGATGTCTATGCGGTTTCGCCGCCGCCTGCGCGCCTCGTCTATCTCGCCGACCTGTTCGGCGTCCACAACCGGACGCTCTTTCCCATCAAGCGCAGCGGCGTCGTCTATGGCGCGGTTTGCTTCACCCGCAACGATCCCTTCGATGCCGATGAACTTGCCTTCCTGGAGGTCATTGCCGAGCCGATCCACACGGTCGTGACGCGGCCGCTGATGGAACGTTTCGCGGCCCAGGAGCTGCGGCTTTCCAAGGGAGAGATCGCCTGCCTCGCCCATGCCAGCGTCGGCCTGACGAGCGAGGAAATCGCATCCGTCACGGAATACCAGGTCGATACGGTGAACACCTACATCAAGGCGGCCGTGAAGAAGCTCGGTGCGACCAATCGTTCGCAAGCCGTGGCCGAAGCCATCCGCAGGCGCCTGATCGATTGA
PROTEIN sequence
Length: 245
MSISALSMVAPNALDDFCDLQSVPVHRHFGRNEIVDRFRRSVPFDYIIISGLDVDGYRFGKGHSIDTDLPPAFMESYAADALSQSDPFVIAAKTSFTRTEEKDVYAVSPPPARLVYLADLFGVHNRTLFPIKRSGVVYGAVCFTRNDPFDADELAFLEVIAEPIHTVVTRPLMERFAAQELRLSKGEIACLAHASVGLTSEEIASVTEYQVDTVNTYIKAAVKKLGATNRSQAVAEAIRRRLID*