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SCNpilot_expt_1000_bf_scaffold_2803_curated_11

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6901..7899)

Top 3 Functional Annotations

Value Algorithm Source
AraC-type DNA-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ40_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 334.0
  • Bit_score: 452
  • Evalue 3.10e-124
  • rbh
AraC-type DNA-binding protein {ECO:0000313|EMBL:EYR79885.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.8
  • Coverage: 334.0
  • Bit_score: 452
  • Evalue 4.40e-124
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 50.5
  • Coverage: 368.0
  • Bit_score: 337
  • Evalue 6.00e-90

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 999
ATGCCGGCAATACCCCTTCCCTTCGTCATCGCGCTCCTGCTCTGCGTCCTCCTCCTGCGGCTGGTCCTGTTGCGCGAGCCCGCCCTTCGGCCAGCCATCGGCTTCGTCGCCGCCTGCACCGTCGTCGCTGCCGTCGTCGGCGCACGGTGGACGTTCGACTGGCCTTTCGTACGATTCCTCCAGCCTGTCCTCGCATCCGGCCTGCCGCCGATCGCCTGGCTGTGTTTCACCGCGGGGCGCGGCAACCGCCGCTGGCTTCATCTGCTGCCGCCATTGCTCGCGCTGATCCTGTCGGCGCTCTGGCCGCTCTGGCGCTCGCCCGTCGATCTCGTGCTCGCTCTGCTCTACTTCGGCTATGGCGCAGCGCTCCTGCGTCTGGCGATCGCCGGGCCGGACAGCTTCGTGACGACGCGACTGAGCGATGTGGCGGGCGCCCGCAAGGCCACCCTTGCGGCAGGCGCGCTCTTGATGACATCCGCCTTCGTGGACCTGCTCATCGCGGTGGATTTCGGCTTCTATCGGGGATCTCACGCCGGGGGCATCGTGACGGCCGGCAACCTCCTGGTCCTGCCGGTGCTTGCCTATGCCGTCGCGGTGATCGGCAGGAGCACGCCGGCGGACGATGCCGGCGAGACGGCAAAGCCGGAGGTCTCCGGCGAAGCCGATGCGCGTGTCGTCGACACGGTCGACCGCCTCATGCAGGAGCGGCAGTTGTTTCGCGATCCCGACCTCACCCTGGACCGGATCGCGCGCCGGGCCGGCATCCCGGCCCGGCAGATTTCCGGCGCCGTCAACCGGCTGCAGGGACGGAACGTCTCGCAACTGGTCAACGGCTACCGCATCGACGCGGCAAAGCGCCTGTTGTCGGAAACCGGCATGCCGGTCACGGCCGTCATGTTCGAATGCGGTTTCCAGACCAAGTCGAACTTCAACCGCGAATTCCTCCGCACGGCCGGCTGCAGTCCCAGCGACTTCCGCCGCGCCGCTACGGCAGGGTAG
PROTEIN sequence
Length: 333
MPAIPLPFVIALLLCVLLLRLVLLREPALRPAIGFVAACTVVAAVVGARWTFDWPFVRFLQPVLASGLPPIAWLCFTAGRGNRRWLHLLPPLLALILSALWPLWRSPVDLVLALLYFGYGAALLRLAIAGPDSFVTTRLSDVAGARKATLAAGALLMTSAFVDLLIAVDFGFYRGSHAGGIVTAGNLLVLPVLAYAVAVIGRSTPADDAGETAKPEVSGEADARVVDTVDRLMQERQLFRDPDLTLDRIARRAGIPARQISGAVNRLQGRNVSQLVNGYRIDAAKRLLSETGMPVTAVMFECGFQTKSNFNREFLRTAGCSPSDFRRAATAG*