name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2803_curated_1
R_Proteobacteria_53_8, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..483)
|
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
668..1054
|
Putative MerR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT90_9RHIZ
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:EYR79878.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MerR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_3
unknown
|
Not on your lists |
1330..1491
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1546..2118)
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP5_9RHIZ
rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR79880.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2163..2546)
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP5_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79880.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2640..2894)
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUX8_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79881.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_7
unknown
|
Not on your lists |
3128..3355
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3876..5276
|
L-serine dehydratase SdaA {ECO:0000313|EMBL:EYR79882.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EYR79882.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
L-serine dehydratase SdaA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZE8_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5350..5787
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3G0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79883.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5880..6914
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7W4_9RHIZ
rbh
Putative dienelactone hydrolase {ECO:0000313|EMBL:EYR79884.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6901..7899)
|
AraC-type DNA-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ40_9RHIZ
rbh
AraC-type DNA-binding protein {ECO:0000313|EMBL:EYR79885.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7961..8233)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ11_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79886.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8393..8629)
|
D-alanyl-D-alanine carboxypeptidase DacF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF1_9RHIZ
D-alanyl-D-alanine carboxypeptidase DacF {ECO:0000313|EMBL:EYR79887.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EYR79887.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8626..9822)
|
D-alanyl-D-alanine carboxypeptidase DacF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF1_9RHIZ
rbh
D-alanyl-D-alanine carboxypeptidase DacF {ECO:0000313|EMBL:EYR79887.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EYR79887.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dac; D-alanyl-D-alanine carboxypeptidase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9943..10734)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD9_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79888.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10953..11552)
|
Transglutaminase family protein cysteine peptidase BTLCP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRS0_9RHIZ
rbh
Transglutaminase family protein cysteine peptidase BTLCP {ECO:0000313|EMBL:EYR80959.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12008..12619)
|
Type IV pilus assembly PilZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJG6_9RHIZ
rbh
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EYR80960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12753..13397)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTR0_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13686..14399
|
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNX7_9RHIZ
rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR80962.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rhombiod family transmembrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14583..15011
|
Putative signal-transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ELF4_9RHIZ
Putative signal-transduction protein {ECO:0000313|EMBL:EYR80963.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inosine-5`-monophosphate dehydrogenase protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15188..16150)
|
NTE family protein RssA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM04_9RHIZ
rbh
NTE family protein RssA {ECO:0000313|EMBL:EYR80964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07001 NTE family protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16506..16958)
|
Phosphoribosyl-AMP cyclohydrolase HisI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C680_9RHIZ
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16995..17606)
|
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GTP cyclohydrolase I n=1 Tax=Rhizobium RepID=UPI000365F4A8
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17940..18386
|
Putative nitrogen-fixing NifU-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMH7_9RHIZ
Fe-S cluster formation protein NifU {ECO:0000313|EMBL:EYR80968.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitrogen-fixing NifU-like protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18591..18959
|
Putative membrane protein insertion efficiency factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHP0_9RHIZ
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08998 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18963..19496
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXM0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80971.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19491..20072)
|
S-isoprenylcysteine methyltransferase-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD30_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80972.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved membrane protein of unknown function
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20443..22416
|
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Threonine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZW6_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_29
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22574..23500)
|
Uncharacterized protein {ECO:0000313|EMBL:KEC79461.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
rbh
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X814_RHIFR
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2803_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23657..24241
|
Putative nitroreductase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAT3_9RHIZ
rbh
Putative nitroreductase protein {ECO:0000313|EMBL:EYR81297.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitroreductase protein
rbh
|