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SCNpilot_expt_1000_bf_scaffold_2803_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2803_curated_1
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(1..483)
DNA (483bp) protein (161aa)
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_1000_bf_scaffold_2803_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

668..1054
DNA (387bp) protein (129aa)
Putative MerR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT90_9RHIZ
Putative MerR family transcriptional regulator {ECO:0000313|EMBL:EYR79878.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2803_curated_3
unknown

Not on your lists

1330..1491
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2803_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1546..2118)
DNA (573bp) protein (191aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP5_9RHIZ rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR79880.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2163..2546)
DNA (384bp) protein (128aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXP5_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79880.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2640..2894)
DNA (255bp) protein (85aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUX8_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EYR79881.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_7
unknown

Not on your lists

3128..3355
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2803_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3876..5276
DNA (1401bp) protein (467aa)
L-serine dehydratase SdaA {ECO:0000313|EMBL:EYR79882.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EYR79882.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
L-serine dehydratase SdaA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZE8_9RHIZ rbh
L-serine dehydratase; K01752 L-serine dehydratase [EC:4.3.1.17] rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5350..5787
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3G0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79883.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5880..6914
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7W4_9RHIZ rbh
Putative dienelactone hydrolase {ECO:0000313|EMBL:EYR79884.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6901..7899)
DNA (999bp) protein (333aa)
AraC-type DNA-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ40_9RHIZ rbh
AraC-type DNA-binding protein {ECO:0000313|EMBL:EYR79885.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2803_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7961..8233)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ11_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79886.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8393..8629)
DNA (237bp) protein (79aa)
D-alanyl-D-alanine carboxypeptidase DacF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF1_9RHIZ
D-alanyl-D-alanine carboxypeptidase DacF {ECO:0000313|EMBL:EYR79887.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EYR79887.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
serine-type D-Ala-D-Ala carboxypeptidase; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
SCNpilot_expt_1000_bf_scaffold_2803_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8626..9822)
DNA (1197bp) protein (399aa)
D-alanyl-D-alanine carboxypeptidase DacF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZF1_9RHIZ rbh
D-alanyl-D-alanine carboxypeptidase DacF {ECO:0000313|EMBL:EYR79887.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EYR79887.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dac; D-alanyl-D-alanine carboxypeptidase rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9943..10734)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZD9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79888.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10953..11552)
DNA (600bp) protein (200aa)
Transglutaminase family protein cysteine peptidase BTLCP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRS0_9RHIZ rbh
Transglutaminase family protein cysteine peptidase BTLCP {ECO:0000313|EMBL:EYR80959.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12008..12619)
DNA (612bp) protein (204aa)
Type IV pilus assembly PilZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJG6_9RHIZ rbh
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EYR80960.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12753..13397)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTR0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80961.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13686..14399
DNA (714bp) protein (238aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNX7_9RHIZ rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR80962.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rhombiod family transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14583..15011
DNA (429bp) protein (143aa)
Putative signal-transduction protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ELF4_9RHIZ
Putative signal-transduction protein {ECO:0000313|EMBL:EYR80963.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inosine-5`-monophosphate dehydrogenase protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15188..16150)
DNA (963bp) protein (321aa)
NTE family protein RssA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM04_9RHIZ rbh
NTE family protein RssA {ECO:0000313|EMBL:EYR80964.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07001 NTE family protein rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16506..16958)
DNA (453bp) protein (151aa)
Phosphoribosyl-AMP cyclohydrolase HisI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C680_9RHIZ
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisI; phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19); K01496 phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
SCNpilot_expt_1000_bf_scaffold_2803_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16995..17606)
DNA (612bp) protein (204aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] rbh
GTP cyclohydrolase I n=1 Tax=Rhizobium RepID=UPI000365F4A8 rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17940..18386
DNA (447bp) protein (149aa)
Putative nitrogen-fixing NifU-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMH7_9RHIZ
Fe-S cluster formation protein NifU {ECO:0000313|EMBL:EYR80968.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitrogen-fixing NifU-like protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18591..18959
DNA (369bp) protein (123aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHP0_9RHIZ
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08998 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18963..19496
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXM0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80971.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2803_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19491..20072)
DNA (582bp) protein (194aa)
S-isoprenylcysteine methyltransferase-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD30_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80972.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_2803_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20443..22416
DNA (1974bp) protein (658aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Threonine--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZW6_9RHIZ rbh
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_29
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22574..23500)
DNA (927bp) protein (309aa)
Uncharacterized protein {ECO:0000313|EMBL:KEC79461.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X814_RHIFR rbh
SCNpilot_expt_1000_bf_scaffold_2803_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23657..24241
DNA (585bp) protein (195aa)
Putative nitroreductase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAT3_9RHIZ rbh
Putative nitroreductase protein {ECO:0000313|EMBL:EYR81297.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nitroreductase protein rbh
Displaying items 1-30 of 31 in total

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