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SCNpilot_expt_1000_bf_scaffold_11016_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..851)

Top 3 Functional Annotations

Value Algorithm Source
Putative tRNA-dihydrouridine synthase Dus n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXB3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 283.0
  • Bit_score: 518
  • Evalue 5.10e-144
  • rbh
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.5
  • Coverage: 283.0
  • Bit_score: 518
  • Evalue 7.20e-144
nifR; tRNA-dihydrouridine synthase similarity KEGG
DB: KEGG
  • Identity: 76.9
  • Coverage: 281.0
  • Bit_score: 436
  • Evalue 6.20e-120
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 849
ATGACGTGCTTGAAAGATAAGCAATTGGCGATCCCCAACCTGTCGGCGCCGCTGGCGATCGGCTCACAGACCTTGCGAAACCGGGTGGTGCTGGCGCCGATGTCCGGCGTCACGGATCTTCCGTTCCGCGATCTCGCCTGGCGTTTCGGTGCGGGCCTGGTGGTCACGGAAATGGTGGCGAGCCGCGAACTGGCGCTGAACGCGCGGGAAAGCTGGTCGCGCATCCGCAATTGCGGCATCCGCCCGCACATGGTGCAACTCGCCGGGCGCGAGGCGCACTGGATGGCGGAGGCGGCGCGCATCGCGCAAGGCGAGGGTGCCGACATCATCGACATCAACATGGGCTGCCCGGCCAAGAAGGTGATCGGCGGCTATTCCGGCTCCGNNNNNNNNCGCGATCCCGACCTCGCGCTCGGCCTGATCGAGGCGACCGTCAACGCCGTGAAAGTGCCGGTGACGGTGAAGATGCGGCTCGGCTGGGACCATGATTCGCTGAATGCTCCGCAGATCGCCGCCCGCGCCGAGGCGGCGGGCGCGGCGATGATCACCGTGCACGGCCGCACCCGCATGCAGTTCTACGAGGGCAGGGCGGATTGGGACGCGATTCGTGCCGTGCGCGATGTCCTCTCCATTCCGCTCATCGCCAATGGCGATGTCGATACCGCAGAGGACGCACTGGGAATCCTCCGCCGCTCGGGAGCGGATGCCGTGATGGTCGGCCGTTCCGCGCAGGGCAGGCCGTGGCACCCGGCCGTGCTGGCGGGGGCATGCGCGCATCCCTCCGTGGAAGAGGTCGCGGCGACAGCGGTCGGGCACTACCGCATGATGCTCGATTTCTACGGCATCGAG
PROTEIN sequence
Length: 283
MTCLKDKQLAIPNLSAPLAIGSQTLRNRVVLAPMSGVTDLPFRDLAWRFGAGLVVTEMVASRELALNARESWSRIRNCGIRPHMVQLAGREAHWMAEAARIAQGEGADIIDINMGCPAKKVIGGYSGSXXXRDPDLALGLIEATVNAVKVPVTVKMRLGWDHDSLNAPQIAARAEAAGAAMITVHGRTRMQFYEGRADWDAIRAVRDVLSIPLIANGDVDTAEDALGILRRSGADAVMVGRSAQGRPWHPAVLAGACAHPSVEEVAATAVGHYRMMLDFYGIE