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SCNpilot_expt_1000_bf_scaffold_11016_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 997..2208

Top 3 Functional Annotations

Value Algorithm Source
Bifunctional enzyme IspD/IspF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0F8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 403.0
  • Bit_score: 695
  • Evalue 3.30e-197
  • rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 403.0
  • Bit_score: 695
  • Evalue 4.70e-197
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60) similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 400.0
  • Bit_score: 549
  • Evalue 9.30e-154
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1212
ATGCTGGCGGAAAATGCGCTATCCTGCGGGGTTGTGATCGTTGCCGCCGGGCGCGGCGAGCGGGCAGGCAGCCATGCCGACGGCCCCAAGCAGTACCGCCGCATCGGCGGAAGGCCGGTGATCTCCCATACGCTCGATCTCTTTGTCAATTGGCCGCACGCCAAGTGTATCGTCGTCGTGATTCATCCCGATGACGAGGCGCTGCTGGAGGCCGCCCGCGCCGCCGCCCTGCCTGCGGGCGACCGCCTGACCGTCGTGCACGGCGGGCCGACGCGCCAGCAGTCCGTGCTCGCGGGGCTGGAAGCCCTTGCCGCAGACGGGATCAGCCATGTGCTCATCCAGGATGCCGTGCGCCCCTTCGTCGAGCCGGCCATCCTGGAGCGCACCCTCACCGCCTTCCACCACGGCGCGCGCGCGGTCCTGCCCGCCGTCGCCGTCGCGGACACGCTGAAACGGGCGGATGCCAACGGCAATGTCGCCGAAACGGTCTCCCGCTCCGGCCTTTTCGCGGCGCAGACGCCGCAGTCCTTCCACTTTCAGACCATCCTGGAGGCGCATCGCCGAGCAGCGGCCTCCGCCCGTACGGATTTCACCGACGACGCAGCGATCGCCGAATGGGCCGGGGTGCGCGTCCACCTCGTCGAAGGCGGCGCCGGCAACGTCAAGCTCACCCTGCAGAAGGATCTCGCCATGGCCGACCAGCGCCTTTCCCATGGGCTGCCGGATGTGCGCACCGGCAACGGCTACGACGTGCACCAGCTCGTGCAGGGCGACGGCGTGACGCTCTGCGGCCTGTTCATCGCGCACGACCAGAAGCTGTCAGGCCATTCGGATGCCGACGTCGCCCTGCACGCCTTGACGGACGCCCTGCTCGCCACCTGCGGCGCGGGCGACATCGGCGACCATTTCCCGCCCTCCGATCCGCAATGGAAGGGCGCGGCCTCCCGCATCTTCCTCGAACATGCGGCGGCCATCGTGCGCGAAAAGGGCGGCACGATCATGAATGCCGACGTCTCGCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTGCGGAATTCCTCGGCATCGCCCTCGACCGCTGCTCGGTGAAGGCGACGACCAACGAGAAAATCGGCTTCATCGGGCGGCGCGAGGGCATCGCCGCGATCGCCACGGCAACCGTGGTCTACAAGGGGAGCGAGGCATGA
PROTEIN sequence
Length: 404
MLAENALSCGVVIVAAGRGERAGSHADGPKQYRRIGGRPVISHTLDLFVNWPHAKCIVVVIHPDDEALLEAARAAALPAGDRLTVVHGGPTRQQSVLAGLEALAADGISHVLIQDAVRPFVEPAILERTLTAFHHGARAVLPAVAVADTLKRADANGNVAETVSRSGLFAAQTPQSFHFQTILEAHRRAAASARTDFTDDAAIAEWAGVRVHLVEGGAGNVKLTLQKDLAMADQRLSHGLPDVRTGNGYDVHQLVQGDGVTLCGLFIAHDQKLSGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAAIVREKGGTIMNADVSLXXXXXXXXXXXXXXXXXLAEFLGIALDRCSVKATTNEKIGFIGRREGIAAIATATVVYKGSEA*