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SCNpilot_expt_1000_bf_scaffold_5456_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1..696)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter related {ECO:0000313|EMBL:KHQ49820.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KHQ49820.1};; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.8
  • Coverage: 208.0
  • Bit_score: 277
  • Evalue 2.30e-71
ABC-type sugar transport system, ATPase component n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RT38_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 65.4
  • Coverage: 208.0
  • Bit_score: 253
  • Evalue 2.50e-64
rbsAb; ribose ABC transporter, ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 63.9
  • Coverage: 208.0
  • Bit_score: 247
  • Evalue 3.30e-63

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Taxonomy

Ponticoccus sp. UMTAT08 → Ponticoccus → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 696
ATGAACTGGAGCAAGCATGGCGGGCACGATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCCTGACGGATTGCGACTTCGAAGCCTGCAAGGGCGAAGTCCACGCGATCGTCGGGGAGAACGGCAGCGGCAAGAGCACGCTGGCGAAGATCATTTCCGGCGTCCTGGTGCCGGACAGCGGTGAATGCGAGGTGCTCGGCGCCAGCATCGCGACGCCGCGCCAGGCGCGCGACCGCGGCGTCGCGACGATTTTCCAGGAAGTGCTGATCGCCGACGAGGCAAGCGTGCTCGACAATCTCTATGTCGGCAGCGAAGGGCTGGTCGGCACCGGCAAGAGCCGCAGCCGCAAGCTTCGCGAAGCCGGCGAGATCATGACGCGCTGCGTCGGGGATGCCGTCGATCTCGATGCGCGCGCNNNNNNNNNNNNNNNGAGCGTGCGCCAGTGGATCGTCATCGTCCGCGCCATCCTGCGGTCGCCGGACGTGCTCATCTTCGACGAATCCTCCGCCGCGCTCGACCTGGAAGCGACCCAGCGTCTGTTTGCCGAAATCACCCGCCTTCGCGATGCGGGCAAGACCATCCTGCTGGTGACGCACCGCATTGCCGAACTCGTCAGCATTGCCGACCGCGCCACGATCCTGCGCGATGGGAAGGCCGTCGGCGTGCTTCAGCGCGAGGAGATC
PROTEIN sequence
Length: 232
MNWSKHGGHDFXXXXXXXXXXXXXALTDCDFEACKGEVHAIVGENGSGKSTLAKIISGVLVPDSGECEVLGASIATPRQARDRGVATIFQEVLIADEASVLDNLYVGSEGLVGTGKSRSRKLREAGEIMTRCVGDAVDLDARXXXXXXSVRQWIVIVRAILRSPDVLIFDESSAALDLEATQRLFAEITRLRDAGKTILLVTHRIAELVSIADRATILRDGKAVGVLQREEI