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SCNpilot_expt_1000_bf_scaffold_5456_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5456_curated_1
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..696)
DNA (696bp) protein (232aa)
ABC transporter related {ECO:0000313|EMBL:KHQ49820.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KHQ49820.1};; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
ABC-type sugar transport system, ATPase component n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RT38_9PSED
rbsAb; ribose ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_5456_curated_2
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(752..1891)
DNA (1140bp) protein (380aa)
Ribose ABC transporter {ECO:0000313|EMBL:KHQ49821.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
ribose ABC transporter, substrate-binding protein rbh
Ribose ABC transporter, substrate-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXL4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5456_curated_3
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1918..2448)
DNA (531bp) protein (177aa)
Putative hydrolase {ECO:0000313|EMBL:KHQ49822.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
Putative carboxylesterase protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DFP8_9RHIZ rbh
alpha/beta hydrolase fold-1 catalytic domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_5456_curated_4
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2766..2981)
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KHQ49823.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
hypothetical protein
UPI0003CEBC1F related cluster n=1 Tax=unknown RepID=UPI0003CEBC1F
SCNpilot_expt_1000_bf_scaffold_5456_curated_5
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3616..4494)
DNA (879bp) protein (293aa)
Putative 6-phosphogluconate dehydrogenase protein {ECO:0000313|EMBL:KHQ49825.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
putative 6-phosphogluconate dehydrogenase rbh
6-phosphogluconate dehydrogenase protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PN02_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5456_curated_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4838..5533
DNA (696bp) protein (232aa)
GntR family transcriptional regulator rbh
GntR family transcriptional regulator n=4 Tax=Rhizobium RepID=F2A1R1_RHIET rbh
Probable transcriptional regulator protein, GntR family {ECO:0000313|EMBL:ACE93820.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_5456_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5602..8172)
DNA (2571bp) protein (857aa)
Bacteriophytochrome {ECO:0000313|EMBL:EYR84624.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR84624.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003625180 rbh
bacteriophytochrome protein rbh
SCNpilot_expt_1000_bf_scaffold_5456_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8129..8686)
DNA (558bp) protein (186aa)
Uncharacterized protein {ECO:0000313|EMBL:KDP71215.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Heme oxygenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D312_9RHIZ
heme oxygenase; K07215 heme oxygenase
SCNpilot_expt_1000_bf_scaffold_5456_curated_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8762..8941)
DNA (180bp) protein (60aa)
PAS domain S-box n=1 Tax=Rhizobium sp. CF080 RepID=J2T1T7_9RHIZ
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EUB98304.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
PAS/PAC sensor hybrid histidine kinase response regulator protein (EC:2.7.3.-)
Displaying 9 items

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