ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5456_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4838..5533

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 87.9
  • Coverage: 223.0
  • Bit_score: 386
  • Evalue 4.60e-105
  • rbh
GntR family transcriptional regulator n=4 Tax=Rhizobium RepID=F2A1R1_RHIET similarity UNIREF
DB: UNIREF100
  • Identity: 87.9
  • Coverage: 223.0
  • Bit_score: 386
  • Evalue 1.50e-104
  • rbh
Probable transcriptional regulator protein, GntR family {ECO:0000313|EMBL:ACE93820.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.9
  • Coverage: 223.0
  • Bit_score: 386
  • Evalue 2.00e-104

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium etli → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 696
ATGGCAGATTCGGAACTGCAGATTGCACGACAGAGCGCGTCACTGCGGATACAGGTGGAAGACAGGATCAGGCAGGCCATCGCCAATGGCCGTTTCAAACCCGGCCAAAGGCTCGTCGAGCGCGAGCTCTGCGAAATGATCGGCGTCGGGCGGACCTCCGTTCGCGAGGCGCTGCGGCAGCTCGAGGCGGAAGGGCTGATCACCAGCTACCCGCACAAAGGCCCCGTCGTCAGCACCATCACCTACGACGAGGCGGCGCAGCTCTATACGGTGCGCGCATTGCTGGAAAGCTTCGCAGGCCAGCAGTTTGCCGAGAACGGCACCTATGAGGACATGGCCACGCTGCAGGCGGCGGTCACCGAGTTCGAGGCCGCGGCCGAAAGCGGCGTGGGAAGCCGGCTGATCGAGGCGAAGAACGCCTTCTACGACTGTCTCATGGACGGCAGCAAGAACGTGTTCGTGCGCCAGATGCTGACGTCGCTGCACAACCGGATCAACCTCTTGCGCATGACCACCATGACCCAGCCGGGCCGCCTTCGCCACAGCATCGCCGAGATCAAGGAGATCGCCGACGCGATCCTCCAGCGAAACGGGCCACGCGCCGCGGCCGCCTGCAAGCACCATATCGACATGGCCGCCAAGGTCGCCCTCGCCTACCTGCGCGACAACCCGCCGGCGGACGCGACGCAGGGGTGA
PROTEIN sequence
Length: 232
MADSELQIARQSASLRIQVEDRIRQAIANGRFKPGQRLVERELCEMIGVGRTSVREALRQLEAEGLITSYPHKGPVVSTITYDEAAQLYTVRALLESFAGQQFAENGTYEDMATLQAAVTEFEAAAESGVGSRLIEAKNAFYDCLMDGSKNVFVRQMLTSLHNRINLLRMTTMTQPGRLRHSIAEIKEIADAILQRNGPRAAAACKHHIDMAAKVALAYLRDNPPADATQG*