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SCNpilot_expt_1000_bf_scaffold_5456_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5602..8172)

Top 3 Functional Annotations

Value Algorithm Source
Bacteriophytochrome {ECO:0000313|EMBL:EYR84624.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EYR84624.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.6
  • Coverage: 854.0
  • Bit_score: 1352
  • Evalue 0.0
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003625180 similarity UNIREF
DB: UNIREF100
  • Identity: 58.1
  • Coverage: 840.0
  • Bit_score: 993
  • Evalue 1.60e-286
  • rbh
bacteriophytochrome protein similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 840.0
  • Bit_score: 980
  • Evalue 2.70e-283
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2571
TTGCCCTGCGATGCTTTGAAAGTGATCGTGTTGTTTGCCAGTGACCGTGTAAACCTCAGCACCTGCGACCGGGAGCCGATCCACATCCCCGGCACCATCCAGCCGCATGGGTGCCTTCTCGCCTGCGACATCAGCCTGTCGAGGATCGAGCGTGCCTCCGCGAATGCGGCCGGCATCCTGGGTCATCAGGGAGGGCTTGTCGGTCGCGCCATCGCGGACGTCCTGGGCGCGAAACTGCTGCACGACCTGCGCAACGCAATGGCTGCGACCAGCTCGGCGTCACGGCCCGCGCTCATGCTGGACGTCACCATCGGCGAACGCGTGCTGGACATCGCCATCCATCACTACAGGTCCGCGGTCATCATCGAGTTCGAGCCGGCGCCCTCCATCGGCCAGCCCCTGCATATCGCCCGCGAGATGATCGGCCGGATCAGCGATGTCACCGAGGTCGAACGCCTTGTGCAGCGCGCGGGGCGGATCGTTGCCGGCGCCACCGGCTATGACCGCGTGATGGTCTACCGCTTCGAGCACGACGGTTCGGGAAAAGTGGTGAGCGAAACCAGGCGGGCGGACCTGGAGAGCTTTCTCGGGCAGTATTTTCCGGCGAGCGACATCCCCCAGCAGGCGCGTGCGCTCTACCTGAAGAACACGATCCGCGTCATTGCCGACGCAAGCGGCAGCCGCGTTCCGGTCGAACCGGTGCTGGATGCATCGGGCGAGCCGCTCGACCTCAGCTTCGCGCATCTGCGCAGCGTGTCGCCCATCCATTGCGAATATCTGCGCAACATGGGTGTTGCCGCCTCCATGTCCATCTCGATCGTTCTCGACGGCCAGCTCTGGGGCCTGATCGCCTGCCACCACTATTCGCCGCGCGTGCTGCCCATGGCGCAGCGCGTCGCCATGGAGATCTTCGGCGAGTTTTTCTCCCTCCATCTGAAATCGCTGAAGGAGCGCCGGCGCGTGGCGGCCGTTGCCGGCACCCGCGAGGCGCTCGATCGCTTCCTTATCCTTTCGTCCCATCACGAGGATGTCGGCGAACTGCTGCGGCAGAGCCTTCACGAGTTTTCCAGCCTGCTTCCCAACGACGGTATCGGCGTGATGTTCGATGGGCGGTGGATCGGCATCGGCGTCACGCCTCCGGATGACGCGCTGCCCGCTCTTCTCGATTTCGTGCAGGGCGTCGGGGAGGGCCGCATCTGGGCGACCCATGCCCTGTCGCAGAAGATGCCGGAGGCCGCGGCCTATAGCGACCGTGTTTCCGGCGTCCTTGCCGTTCCGCTTTCGCAGACGGGATCGGACTGCCTTCTCTTCTTCCGCAAGGAACTCGTCCAGACCCTCGACTGGGCGGGCAACCCGGACAAGACCTACGAGGTCGGGCCGCTCGGCGACCGGCTCACGCCGCGCAAGAGCTTTGCGATCTGGAAGGAGACGGTCAAGGCGCAGGCCCAGTCCTGGACCGAGTCCGAACGGGAGATCGCCGAGATCATCCGTGTCGCGATCGTCGAGATCGTGCTCCGGCAGAACGAGCTGATGGCCGACGAAAGGCGCAAGTCCGAAGTGCGCCAGCGCATGCTGAACCAGGAACTGAGCCATCGGGTGAAAAACATCCTGGCGGTCATCAAGTCCCTGGTGACGAGCCCCCAGCATCACAAGAGCACGCTGGAGGCGTATGTCGCGACCCTGCAGGGCCGCATCGAAGCCCTGTCCATCGCGCATGACCAGGTGGTCCGCGGCGATGGCGGCGGCATACTTGCCGAGCTCCTGGAAGCCGAGCTCCAGCCCTACCGGGCCAAGGCATCCACGGTCGCTCTCGACGGGCCGCCGGTCTGGCTGGACAGCCGCGCGTTCTCCGTCATGGCGCTGGTCTTCCATGAACTTGCGACCAATGCCGCCAAATATGGTGCGCTCTCCGTGCCGACGGGCGAGGTGGCGATCACATGGGAGATGACGGACACGGGCCTATGCCAGATCTTCTGGCGCGAGCGGGGCGGCCCCCTCGTCAGCGTTCCCGCCCGCAGCGGCTTCGGCAGCGCGCTGATCGATCGCAGCGTTCCCTATGACCTCGGCGGCGAAAGCATCATCCGGTTCGAGCCTTCGGGGCTCGTGGCGACCTTCAAAATTCCGCCGGCGCATGTGAAGCTGACGTCATCGAAACCAAGGACGACGGCGCAGGCGGCGGTGCGCGCGCCTGCCCCGGCGAACGCATTGGGCGCAGCCGATCCTTCCGTCCTCATTCTGGAGGACCAGATCCTGATCGCCCTCGATCTCGAGGCCATGCTCGCGGATGAAGGCCTGTCGAGAGTGATCACCACCAGCTCTGCCCGCCAGGCGATGGCCCAGATCGAGGTGCAGGCGCCGGAACTTGCCATCCTCGACATCAATCTCGGGCCGACCACGTCCTTCTCCGTGGCGGCCGAGCTCCGCAAACGTGCCGTTCCCTTCGTCTTTGCGACCGGTTACGGCGAAAATGCGCAGCTTCCGGAGGACCTTGCCGGCGTGCCGATCGTGCGCAAGCCCTACAGCCGCAACACGATCGTTTCCGCGCTCACGGCGCTTTTGCAGGGCCGATAG
PROTEIN sequence
Length: 857
LPCDALKVIVLFASDRVNLSTCDREPIHIPGTIQPHGCLLACDISLSRIERASANAAGILGHQGGLVGRAIADVLGAKLLHDLRNAMAATSSASRPALMLDVTIGERVLDIAIHHYRSAVIIEFEPAPSIGQPLHIAREMIGRISDVTEVERLVQRAGRIVAGATGYDRVMVYRFEHDGSGKVVSETRRADLESFLGQYFPASDIPQQARALYLKNTIRVIADASGSRVPVEPVLDASGEPLDLSFAHLRSVSPIHCEYLRNMGVAASMSISIVLDGQLWGLIACHHYSPRVLPMAQRVAMEIFGEFFSLHLKSLKERRRVAAVAGTREALDRFLILSSHHEDVGELLRQSLHEFSSLLPNDGIGVMFDGRWIGIGVTPPDDALPALLDFVQGVGEGRIWATHALSQKMPEAAAYSDRVSGVLAVPLSQTGSDCLLFFRKELVQTLDWAGNPDKTYEVGPLGDRLTPRKSFAIWKETVKAQAQSWTESEREIAEIIRVAIVEIVLRQNELMADERRKSEVRQRMLNQELSHRVKNILAVIKSLVTSPQHHKSTLEAYVATLQGRIEALSIAHDQVVRGDGGGILAELLEAELQPYRAKASTVALDGPPVWLDSRAFSVMALVFHELATNAAKYGALSVPTGEVAITWEMTDTGLCQIFWRERGGPLVSVPARSGFGSALIDRSVPYDLGGESIIRFEPSGLVATFKIPPAHVKLTSSKPRTTAQAAVRAPAPANALGAADPSVLILEDQILIALDLEAMLADEGLSRVITTSSARQAMAQIEVQAPELAILDINLGPTTSFSVAAELRKRAVPFVFATGYGENAQLPEDLAGVPIVRKPYSRNTIVSALTALLQGR*