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SCNpilot_expt_1000_bf_scaffold_6727_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1..348)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000361DBCB similarity UNIREF
DB: UNIREF100
  • Identity: 81.0
  • Coverage: 116.0
  • Bit_score: 196
  • Evalue 1.10e-47
potB4; polyamine ABC transporter permease PotB; K02054 putative spermidine/putrescine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 77.2
  • Coverage: 114.0
  • Bit_score: 171
  • Evalue 1.50e-40
Polyamine ABC transporter, permease protein PotB-4 {ECO:0000313|EMBL:ADE86180.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.2
  • Coverage: 114.0
  • Bit_score: 171
  • Evalue 6.80e-40

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Taxonomy

Rhodobacter capsulatus → Rhodobacter → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 348
ATGGTCATGCCGCTCTTCGCGGTGCTCGACAACATTCCGCGCCGCCTGATCGAGGCCTCGGAAGCCCTCGGCGTTGGCCCGTTCATGACCTTCTGGAAGGTGATCTTCCCGCTGTCGCTCGGCGGTGTCGTCGCCGGCGCGACCATGACCTTCTGCCTGTCCTTCGGCGATTTCGTCGCGCCCGTGCTCGTCGGCGGGCCGGCCGGGACGATGGTGGCGACCCTCCTGCAAACGCAGTTCGGCGCCGCACTCAACTGGCCGCTCGGATCGGCGCTCGCGACGCTCGTGCTCGCGCTGGTGCTGATCCTCCTGCAACTCTCCAGCCGCCTCGACCGGGCCGGCCGGGTC
PROTEIN sequence
Length: 116
MVMPLFAVLDNIPRRLIEASEALGVGPFMTFWKVIFPLSLGGVVAGATMTFCLSFGDFVAPVLVGGPAGTMVATLLQTQFGAALNWPLGSALATLVLALVLILLQLSSRLDRAGRV