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SCNpilot_expt_1000_bf_scaffold_6727_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6727_curated_1
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..348)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000361DBCB
potB4; polyamine ABC transporter permease PotB; K02054 putative spermidine/putrescine transport system permease protein
Polyamine ABC transporter, permease protein PotB-4 {ECO:0000313|EMBL:ADE86180.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCNpilot_expt_1000_bf_scaffold_6727_curated_2
unknown

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comp(877..1059)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6727_curated_3
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1059..1916)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037EA5B6 rbh
potA4; polyamine ABC transporter ATP-binding protein PotA (EC:3.6.3.31); K02052 putative spermidine/putrescine transport system ATP-binding protein rbh
Polyamine ABC transporter, ATP-binding protein PotA-4 {ECO:0000313|EMBL:ADE86181.1}; EC=3.6.3.31 {ECO:0000313|EMBL:ADE86181.1};; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCNpilot_expt_1000_bf_scaffold_6727_curated_4
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1994..3052)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037259E2 rbh
potD4; polyamine ABC transporter periplasmic polyamine-binding protein PotD; K02055 putative spermidine/putrescine transport system substrate-binding protein rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETE53119.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;"
SCNpilot_expt_1000_bf_scaffold_6727_curated_5
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3081..4481)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035C4E26 rbh
Fis family sigma54 specific transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:ETE53178.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;"
SCNpilot_expt_1000_bf_scaffold_6727_curated_6
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4478..5647)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036449DB rbh
PAS domain-containing protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ETE53120.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;"
SCNpilot_expt_1000_bf_scaffold_6727_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6647..7087
DNA (441bp) protein (147aa)
Oxidoreductase {ECO:0000313|EMBL:KDP76598.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
3-hydroxybutyrate dehydrogenase type 2 n=1 Tax=Ahrensia sp. R2A130 RepID=E0MQT2_9RHOB
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_6727_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7148..7696
DNA (549bp) protein (183aa)
Acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG89_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EYR78048.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_6727_curated_9
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7712..7816)
DNA (105bp) protein (35aa)
Dihydrolipoamide acyltransferase component {ECO:0000313|EMBL:GAM99056.1}; EC=2.3.1.168 {ECO:0000313|EMBL:GAM99056.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
dihydrolipoyllysine-residue succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component-related enzyme n=3 Tax=Rhizobium meliloti RepID=M4IKW9_RHIML
SCNpilot_expt_1000_bf_scaffold_6727_curated_10
unknown

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7948..8202
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6727_curated_11
unknown

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8266..8418
DNA (153bp) protein (51aa)

This feature has no annotations

Displaying 11 items

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