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SCNpilot_expt_1000_bf_scaffold_6727_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1994..3052)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037259E2 similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 330.0
  • Bit_score: 565
  • Evalue 3.50e-158
  • rbh
potD4; polyamine ABC transporter periplasmic polyamine-binding protein PotD; K02055 putative spermidine/putrescine transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 74.7
  • Coverage: 348.0
  • Bit_score: 542
  • Evalue 7.60e-152
  • rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETE53119.1}; TaxID=1415161 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus Y262.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 348.0
  • Bit_score: 542
  • Evalue 3.40e-151

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Taxonomy

Rhodobacter capsulatus → Rhodobacter → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1059
ATGTCCAGACTGCGCAGATCCGCAATTCTCGCCCTTGCTGCCGCAAGCCTCATCCCCCAGACGCTCGTCGCGAAGGCCGGCGAGCTCAACTACCTGACCTGGGAGGGTTATGCGGTTGACGGCTTCATCTCCAAGTTCGAGGCCGCCTCGGACTGCAAGGTGACGGCCTCCTATGTCGGCTCGAACGACGACTTCGCCGCCAAGCTTGCCGCCGGCGGCGGCGTCTACGACATCATCAGCCCCTCGCTCGATACCGTACCGATGATGCGGCAGGCCGGCTTCGTCGCGCCGATCGACACGGCCAGGGTGGAGGGCTTCGACGGCATCTATCCGGAATTCTCCAAGCAAAGCGACGTGGTGGCCGACGGCGAGACCTGGGCCGTGCCGCTGATCTGGGGCTCCGTCTCGCTGATCTACCGCCCCGACAAGCTGGCCACCAAGCCGGATTCCATCTCGGTCCTGTTCGACCCCGCCCTCAAGGGCAAGGTCTCGCTCTGGGACGACAAGTCAGCGCTCTACTGGACGGCGCGCTATCTCGGCTACGACAATGTCTTCGACCTCACCGACGAGCAACTGGAGGCGGTGAAGGCCAAGCTCATCGAGCAGAAGGCGCTGATCCGCAAGTACTGGGCCTCGGCGGGCGAACTGACCGAGCTGATGGCCAACCAGGAGGTCTATGTCTCCAACGCCTGGACGGGCCTGACCAGCAAGGACGTCAACAACCTCAAGAAGGGCTTCGAGGTCGTCGAGTTCACGCCGAAGGAAAAGGCCGAGGGCTGGATGGACTCCATGATGCTGGTGAAGGACTCGCCGAACGAGGAATGCGCCTACAAGTTCATGAGCTTCATGCAGTCGCCCGAGGGCCAGTGCGGCGTCGCCCAGTCCACCGGCTATTTCCCGGTCAATCCGAAGGCCGTGCAGGGCTGCATGGATGACCAGATGAAGAAGGATCGCCAGGTCGACAATGTCGAGTTCGTCAAGAGCCTCGTCATGTGGCAGCAGCCCGTCCGCCTCGACAAGTATCTGGAAACCTGGAACGCCGTGAAGGCCGCGCCGTAA
PROTEIN sequence
Length: 353
MSRLRRSAILALAAASLIPQTLVAKAGELNYLTWEGYAVDGFISKFEAASDCKVTASYVGSNDDFAAKLAAGGGVYDIISPSLDTVPMMRQAGFVAPIDTARVEGFDGIYPEFSKQSDVVADGETWAVPLIWGSVSLIYRPDKLATKPDSISVLFDPALKGKVSLWDDKSALYWTARYLGYDNVFDLTDEQLEAVKAKLIEQKALIRKYWASAGELTELMANQEVYVSNAWTGLTSKDVNNLKKGFEVVEFTPKEKAEGWMDSMMLVKDSPNEECAYKFMSFMQSPEGQCGVAQSTGYFPVNPKAVQGCMDDQMKKDRQVDNVEFVKSLVMWQQPVRLDKYLETWNAVKAAP*