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SCNpilot_expt_1000_bf_scaffold_13353_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4997..6991

Top 3 Functional Annotations

Value Algorithm Source
Penicillin-binding protein 1A {ECO:0000313|EMBL:EYR80287.1}; EC=2.4.2.- {ECO:0000313|EMBL:EYR80287.1};; EC=3.4.-.- {ECO:0000313|EMBL:EYR80287.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.9
  • Coverage: 665.0
  • Bit_score: 1184
  • Evalue 0.0
penicillin-binding protein 1A n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037F8E06 similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 666.0
  • Bit_score: 1075
  • Evalue 0.0
  • rbh
penicillin-binding protein, 1A family similarity KEGG
DB: KEGG
  • Identity: 81.7
  • Coverage: 666.0
  • Bit_score: 1073
  • Evalue 0.0
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1995
GTGCTTGGCCTTTGGGGCGCCATCGGCGTCGGCGGGCTGGTGCTCTATTACGGCGCGCGCATGCCGAGCGCCACGAGCTGGTCGATCCCCGACCGGCCGCCGAACGTCAAGATCCTGTCGGTCAACGGCGACATCGTCGCCAATCGCGGCCTCACCGGCGGCGAGGCGCTGTCGCTGGAGAACATGTCGCCCTACATTCCCCAGGCCGTCATCGCCATCGAGGACCGGCGCTTCTACGCGCATTTCGGCATCGATCCGCTCGGCCTTGCCCGCGCGATGCTGACCAACCTCACCAGCGGGCGCATGGTCCAGGGCGGCTCGACGCTGACGCAGCAGCTCGCCAAGAACATGTTCCTCTCGCCCGAGCGCACGCTGGAGCGCAAGGTGCAGGAGGTGCTGCTCGCCCTCTGGCTGGAGCACAAATACAGCAAGGACCAGATCCTTGCGATGTATCTCAACCGCGTCTTCTTCGGCTCGAATTCCTATGGCGTGGAAGCGGCCTCGCGGCGCTACTTCAACAAGTCGGCGCGTGACGTCAATCTCGGCGAGGCGGCGCTTCTGGCCGGCCTCCTGAAGGCGCCCTCCCGCCTTTCGCCGGCCCGCGACCCGGAGGCGGCGGAAGCGCGCGCGCAGGTCGTGCTCGGCGCCATGCGCGAGGAAGGCTACGTCACCGACAACGAGATCAAGACGGCAATGTCGCAGACCCCGGCGCGGGCGCGCAGCTACTGGTCCGGCGCGCAATACTACGCCGCCGACATGGTGATGGCGCAGCTTCCCGGCATGATCGGCGACATCAAGGAAGACCTCGTCATCGACACGACGATCGACCTCGACCTGGAGAAGAAGGCCGACGAGACGCTGTCGGCGATGCTCGACAAGGAAGGCGCGAAATCCAACGCCTCGCAGGCGGCCCTCGTCTCCATCGACGGCACGGGGGCGATCCGCGCGCTTGTCGGCGGGCGGGACTATGCGGAAAGCCAGTTCGACCGCGCCTCCAAGGCCAGGCGCCAGCCGGGCTCGGCCTTCAAGCCCTTCGTCTATGCCGCGGCGCTGGAGGCCGGCCGTTCGCCGCTTTCCGTGCGCAACGACGCGCCGGTGAGGATCGGCAAGTGGACGCCCGAGAACTACGACCAGAAATACCGCGGCGAGGTGACGCTCGCCTCCGCGCTCGCCAATTCGCTGAACACCATCGCCGCGCAGCTCGTCATGGAGGTCGGCCCGGGCGAGGTGGTCAAGCTCGCCCGCCGGCTCGGCATCGAATCGGAGCTGCAGGCGAACGCCTCCATCGCGCTCGGCACCTCGGAGGTGACGCTGGTGGAGCTGACCGCGGCCTATGCGCCCTTCATGAACGGCGGCTACAAGGCGACGCCGCATATCATCCGGCGCATCTCGACAGCGGACGGCACGGTGCTCTACGAGAACACCTACGACAACCCGCCCCGCGTGCTGGAGCCGAACATCGTCTCCATGATGAACGGCATGATGATGCGCGTCATCACCGAGGGAACCGGCAAGAACGCCCGCATTCCCGGCTGGCCGGCCGCCGGCAAGAGCGGCACGACGCAGTCCTTCCGCGACGCGCTCTTCGTCGGCTATACCAGCAACCTGACGACCGGCGTCTGGTTCGGCAACGACGACGGCAAGTCGATGAAGAAGGTGACGGGCGGGGGACTTCCCGCCAAGGCCTGGGGCGAGTTCATGACCGCCGCCCATGCCGGCCTGTCACCCTCCCCGCTCTTCGGCACCGCGAACGGCGACCCGCTGCAGGACCCGGCCCGCGCCGCGCCGGAAGAAGGCGGCGACCAGCTCTTCGACATCATTTCCCGCACGCTCGACACCGACCAGCGGCCCGCCGGCAACGGCGAAGCGGTGGCGACCGACCGGACGGGCACGGTCCCCCTCGACGACGGCCTGATCCCGCCGGCCGATGTCGGCGGCGAGCACCGGACCGGCACGCGCCGCACGACCCTCTTCGATTTTCTCACCGGCGGGTGA
PROTEIN sequence
Length: 665
VLGLWGAIGVGGLVLYYGARMPSATSWSIPDRPPNVKILSVNGDIVANRGLTGGEALSLENMSPYIPQAVIAIEDRRFYAHFGIDPLGLARAMLTNLTSGRMVQGGSTLTQQLAKNMFLSPERTLERKVQEVLLALWLEHKYSKDQILAMYLNRVFFGSNSYGVEAASRRYFNKSARDVNLGEAALLAGLLKAPSRLSPARDPEAAEARAQVVLGAMREEGYVTDNEIKTAMSQTPARARSYWSGAQYYAADMVMAQLPGMIGDIKEDLVIDTTIDLDLEKKADETLSAMLDKEGAKSNASQAALVSIDGTGAIRALVGGRDYAESQFDRASKARRQPGSAFKPFVYAAALEAGRSPLSVRNDAPVRIGKWTPENYDQKYRGEVTLASALANSLNTIAAQLVMEVGPGEVVKLARRLGIESELQANASIALGTSEVTLVELTAAYAPFMNGGYKATPHIIRRISTADGTVLYENTYDNPPRVLEPNIVSMMNGMMMRVITEGTGKNARIPGWPAAGKSGTTQSFRDALFVGYTSNLTTGVWFGNDDGKSMKKVTGGGLPAKAWGEFMTAAHAGLSPSPLFGTANGDPLQDPARAAPEEGGDQLFDIISRTLDTDQRPAGNGEAVATDRTGTVPLDDGLIPPADVGGEHRTGTRRTTLFDFLTGG*