ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_1000_bf_scaffold_5731_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..863)

Top 3 Functional Annotations

Value Algorithm Source
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:CDX23851.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.9
  • Coverage: 286.0
  • Bit_score: 412
  • Evalue 5.60e-112
glucose dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381397C similarity UNIREF
DB: UNIREF100
  • Identity: 54.5
  • Coverage: 290.0
  • Bit_score: 310
  • Evalue 1.60e-81
  • rbh
glucose dehydrogenase (EC:1.1.99.10); K00115 glucose dehydrogenase (acceptor) [EC:1.1.99.10] similarity KEGG
DB: KEGG
  • Identity: 53.1
  • Coverage: 290.0
  • Bit_score: 303
  • Evalue 8.30e-80
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 861
ATGATCTACGATTACGTCATCGTGGGGGGCGGCTCGGCCGGCGCGACGCTTGCGGGCCGCCTGTCCGAGAACCCTGCCAGGCAGGTGGTGCTGCTGGAAGCAGGTCCCGACACCCCGCCTGACAACGTGCCGGATGTGATTTCCGACAGTTATCCGGGCCTTTCCTATTTCGATCCGGCCTTCCACTGGACGAAGCTCAGGGTCTTTGCCCGAAACCCCCGTTCCAATTCCGAGGTCGTGCCCCCGACCCGCCTGGAGCAGGCGAGGGTGATGGGTGGCGGATCGTCGATCAACGGCCAGTTCGCCGTGCGCGGGCTTCCCGCCGACTACGACGAATGGGAGGCGATGGGCGTTGCCGGCTGGAACTGGGAGGGAATGCTGCCCTATTTCCGCAAGCTGGAGCGCGATCTCGATTTCGACGGCCCGCTGCACGGCAGGGAAGGCCCGATGCCGATCCGCCGCGTCTTCCCCGAGGACTGGGCGGACTTTACCAAGTCGGTACTCGCCGTCACCGAGAAGGACGACCCTTACAGCGAGGACTACAACGCCTCCTTCGGCGACGGCTCCTTCCCGCTCCCTTTGGCCAACGAGAACGACCGTCGTGTCTCGACCGCGATCGGTTATCTCACCCGCGAGGTGCGGGCCCGCAAGAACCTGCATATCTTCGCCCACACCCAGGTCGAAGGGCTGGAGATCGAGGGCAGGCGCGTTACCGGCGTCAATGCCCGTACGGCAGACCGGCCGCCGGAACTCTGGCGGGCGCGCGAGGTCATCCTGTCTTCCGGCGCGCTGCACACGCCGCCGATCCTGCTGCGTGCCGGTATCGGCCCGGCCGCGGACCTTCGCGCGCTCGGCATTCCG
PROTEIN sequence
Length: 287
MIYDYVIVGGGSAGATLAGRLSENPARQVVLLEAGPDTPPDNVPDVISDSYPGLSYFDPAFHWTKLRVFARNPRSNSEVVPPTRLEQARVMGGGSSINGQFAVRGLPADYDEWEAMGVAGWNWEGMLPYFRKLERDLDFDGPLHGREGPMPIRRVFPEDWADFTKSVLAVTEKDDPYSEDYNASFGDGSFPLPLANENDRRVSTAIGYLTREVRARKNLHIFAHTQVEGLEIEGRRVTGVNARTADRPPELWRAREVILSSGALHTPPILLRAGIGPAADLRALGIP