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SCNpilot_expt_1000_bf_scaffold_5731_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5731_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..863)
DNA (861bp) protein (287aa)
Choline dehydrogenase-like flavoprotein {ECO:0000313|EMBL:CDX23851.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
glucose dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381397C rbh
glucose dehydrogenase (EC:1.1.99.10); K00115 glucose dehydrogenase (acceptor) [EC:1.1.99.10] rbh
SCNpilot_expt_1000_bf_scaffold_5731_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(875..1993)
DNA (1119bp) protein (373aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:CDX23847.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDX23847.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aldehyde dehydrogenase n=1 Tax=Halomonas sp. KM-1 RepID=UPI000289C1C6
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
SCNpilot_expt_1000_bf_scaffold_5731_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2454..3266)
DNA (813bp) protein (271aa)
Glutamine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX42679.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035C4375 rbh
ABC-type polar amino acid transport system, ATPase component (EC:3.6.3.21)
SCNpilot_expt_1000_bf_scaffold_5731_curated_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3263..3919)
DNA (657bp) protein (219aa)
Glutamate and aspartate transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX42682.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037D901D
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5731_curated_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4010..4849)
DNA (840bp) protein (280aa)
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDX23841.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037273C5 rbh
family 3 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_5731_curated_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4895..5887)
DNA (993bp) protein (331aa)
Proline racemase {ECO:0000313|EMBL:CDX23839.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Proline racemase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7FU69_9RHIZ
proline racemase protein (EC:5.1.1.4)
SCNpilot_expt_1000_bf_scaffold_5731_curated_7
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5884..6564)
DNA (681bp) protein (227aa)
Putative HTH-type transcriptional regulator ydhC {ECO:0000313|EMBL:CDX42691.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Putative HTH-type transcriptional regulator ydhC n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S9P6_9PROT
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_5731_curated_8
Osedax symbiont Rs1, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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7330..7650
DNA (321bp) protein (107aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Osedax symbiont Rs1 RepID=S6GCU7_9GAMM
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EPJ43531.1}; TaxID=1330036 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs1.;"
galactonate dehydratase
SCNpilot_expt_1000_bf_scaffold_5731_curated_9
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7647..8483
DNA (837bp) protein (279aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CK29_9RHOB rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EFO31215.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
putative L-rhamnonate dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_5731_curated_10
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8574..9299
DNA (726bp) protein (242aa)
GntR family transcriptional regulator n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CK27_9RHOB
GntR family transcriptional regulator {ECO:0000313|EMBL:EFO31213.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5731_curated_11
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9325..10224
DNA (900bp) protein (300aa)
Extracellular solute-binding protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MTQ1_9ACTO
Extracellular solute-binding protein {ECO:0000313|EMBL:EIF88148.1}; TaxID=1114943 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488.;"
extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5731_curated_12
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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10221..11195
DNA (975bp) protein (325aa)
Polar amino acid transporter permease {ECO:0000313|EMBL:EWM14971.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
ABC transporter permease n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE3DA rbh
polar amino acid ABC transporter inner membrane protein; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5731_curated_13
Streptomyces sp. SPB78, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11192..11950
DNA (759bp) protein (253aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Streptomyces RepID=UPI0001FFF90B rbh
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFL02594.1}; TaxID=591157 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain SPB78).;"
glnQ1; Glutamine transport ATP-binding protein GlnQ (EC:3.6.3.-)
SCNpilot_expt_1000_bf_scaffold_5731_curated_14
unknown

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11951..12013
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 14 items

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