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SCNpilot_expt_1000_bf_scaffold_5731_curated_7

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5884..6564)

Top 3 Functional Annotations

Value Algorithm Source
Putative HTH-type transcriptional regulator ydhC {ECO:0000313|EMBL:CDX42691.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.3
  • Coverage: 218.0
  • Bit_score: 249
  • Evalue 3.80e-63
Putative HTH-type transcriptional regulator ydhC n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S9P6_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 33.7
  • Coverage: 208.0
  • Bit_score: 134
  • Evalue 1.70e-28
transcriptional regulator, GntR family similarity KEGG
DB: KEGG
  • Identity: 32.4
  • Coverage: 210.0
  • Bit_score: 109
  • Evalue 1.80e-21

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Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 681
ATGAGCTACTCATATAAGCTTTCGGCGGGAATCGCGGACAACCTCGTTGCCGTGCTTGAGAATGCGATTGTCTTTCTGGAGCTCGCGCCAAGCGAACGTCTGACCGAGGAAGACGTGGCGGAGCGCTACGGCGTCAGCCGTTCTCCGGTGCGTGATGCGTTGCGTGCGCTGGAGCGCGACGGTCTCGTGTTGCGCGAGGCGCGCAAGGGCATATGGGTCACACCCATGTCGCTGCGGGATTTCGACGAGATCTACCGCTGCCGCATCGCTCTGGAGGCCATTGCGGCCGAGCAGGCGGCGCGCTCGGCCAATGCCGCCCTCAAGGAGCAGCTCTGGCAGGTGCTCGATGGGATGAAGAAGGCGCGGGAGGCCGGCGATGCCCGGCTCTTCTTCACGCATGACGTGCGCGGCTCCGAACTGATCTACGAGATTGCCGACAACACCACACTGCGCCGGCTGCTCAAGGGCCTGGAAAAGCAGGCATTGCGCTATCGCTATCACCTCTACCAGCGCGACCGGAGTGTCGTGGATCTCTCCTTCGACGATACGGCGCGGGTTTTCCAGGCGATCGTGGACGGCGATGCCGAGCGTTCCTACGCGCTGGAGCACGACCTGATCGAGAAGATCTGGCGCGAGACACGCGATGCCATCCGTGCCGAGTTCGGAGAGGGTCGCAAATGA
PROTEIN sequence
Length: 227
MSYSYKLSAGIADNLVAVLENAIVFLELAPSERLTEEDVAERYGVSRSPVRDALRALERDGLVLREARKGIWVTPMSLRDFDEIYRCRIALEAIAAEQAARSANAALKEQLWQVLDGMKKAREAGDARLFFTHDVRGSELIYEIADNTTLRRLLKGLEKQALRYRYHLYQRDRSVVDLSFDDTARVFQAIVDGDAERSYALEHDLIEKIWRETRDAIRAEFGEGRK*