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SCNpilot_expt_1000_bf_scaffold_4159_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 3144..3764

Top 3 Functional Annotations

Value Algorithm Source
Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT65_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.7
  • Coverage: 204.0
  • Bit_score: 393
  • Evalue 1.10e-106
  • rbh
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EYR78906.1}; EC=1.14.11.33 {ECO:0000313|EMBL:EYR78906.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.7
  • Coverage: 204.0
  • Bit_score: 393
  • Evalue 1.50e-106
alkylated DNA repair protein; K03919 alkylated DNA repair protein [EC:1.14.11.-] similarity KEGG
DB: KEGG
  • Identity: 75.0
  • Coverage: 200.0
  • Bit_score: 322
  • Evalue 9.50e-86
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
ATGCCGGCTGAGCGCGGCCTCGCGCCGGGGCTGCGCTATTTCCCTGACCGTTTCGACCGGGCGGCGCAGGAAACGCTCGTTGCCGCCATCCGGCAGGTCGTGGCCGAGGCGCCGCTCTTCGTGCCGCGCATGCCGAAGACCGGAAAACCCATGTCGGTCCGCATGACCAATTGCGGACCGCTCGGCTGGGTGACGGACAAGGATCGCGGCTACCGCTACCAGCCGACGCATCCCGAGACCGGCCGTCCCTGGCCCGCCATTCCGGACATGCTTCTGGACCTGTGGAACGACGTCTCCGGCTTCCGGGAGCCGCCCGAGGCCTGCCTCGTCAATTTCTACGATCCCGATGCCAGGATGGGGCTGCACCAGGACCGCGACGAGAGCGAATTTTCCGCGCCGGTCGTCTCGGTGTCCCTCGGGGATCAGTGCCTGTTCCGCGTCGGCGGCGTTTCCCGCAGCGATCCGACCCGCTCCTTCCGGCTGTCGAGCGGTGACGTCTTCGTCTTCGGCGGCGAAAGCCGGCTGGTGTTCCACGGCGTCGACCGGATCTATCCCGGCACCTCGACGCTTCTGAAAAACGCCGGGCGCATCAACCTGACGCTTCGCCGCGTCAATCCGTAG
PROTEIN sequence
Length: 207
MPAERGLAPGLRYFPDRFDRAAQETLVAAIRQVVAEAPLFVPRMPKTGKPMSVRMTNCGPLGWVTDKDRGYRYQPTHPETGRPWPAIPDMLLDLWNDVSGFREPPEACLVNFYDPDARMGLHQDRDESEFSAPVVSVSLGDQCLFRVGGVSRSDPTRSFRLSSGDVFVFGGESRLVFHGVDRIYPGTSTLLKNAGRINLTLRRVNP*