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SCNpilot_expt_1000_bf_scaffold_4159_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4159_curated_1
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..113)
DNA (111bp) protein (37aa)
winged helix family two component transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
Transcriptional regulatory protein ChvI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWE0_9RHIZ
Two-component transcriptional regulatory protein ChvI {ECO:0000313|EMBL:CCF21586.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_expt_1000_bf_scaffold_4159_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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429..2039
DNA (1611bp) protein (537aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYX9_9RHIZ rbh
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2153..2587
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUC4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78904.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptidyl-tRNA hydrolase domain-containing protein; K15034 ribosome-associated protein
SCNpilot_expt_1000_bf_scaffold_4159_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2682..3140
DNA (459bp) protein (153aa)
Putative peptidoglycan-binding LysM domain-containing protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U3H1_RHIRD
Putative peptidoglycan-binding LysM domain-containing protein {ECO:0000313|EMBL:EGP58382.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4159_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3144..3764
DNA (621bp) protein (207aa)
Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT65_9RHIZ rbh
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EYR78906.1}; EC=1.14.11.33 {ECO:0000313|EMBL:EYR78906.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
alkylated DNA repair protein; K03919 alkylated DNA repair protein [EC:1.14.11.-] rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3828..4823)
DNA (996bp) protein (332aa)
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pantothenate kinase n=1 Tax=Rhizobium giardinii RepID=UPI000372A3C8 rbh
coaA; pantothenate kinase (EC:2.7.1.33) rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4823..5143)
DNA (321bp) protein (107aa)
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWC1_9RHIZ
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisE; phosphoribosyl-ATP pyrophosphatase HisE (EC:3.6.1.31)
SCNpilot_expt_1000_bf_scaffold_4159_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5154..5930)
DNA (777bp) protein (259aa)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ90_9RHIZ rbh
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisF; imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5927..6670)
DNA (744bp) protein (248aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV00_9RHIZ rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6684..6977)
DNA (294bp) protein (98aa)
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF07_9RHIZ
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
SCNpilot_expt_1000_bf_scaffold_4159_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7334..7804)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWC6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78913.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4159_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7826..8320)
DNA (495bp) protein (165aa)
Imidazoleglycerol-phosphate dehydratase HisB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ94_9RHIZ rbh
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8709..10877)
DNA (2169bp) protein (723aa)
Malate synthase G n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G491_RHIML rbh
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
glcB; malate synthase G (EC:2.3.3.9) rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11014..12069)
DNA (1056bp) protein (352aa)
Putative hydantoinase/oxoprolinase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHV0_9RHIZ rbh
Putative hydantoinase/oxoprolinase family protein {ECO:0000313|EMBL:EYR83744.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydantoinase/oxoprolinase rbh
SCNpilot_expt_1000_bf_scaffold_4159_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12039..12965)
DNA (927bp) protein (309aa)
Putative hydantoinase/oxoprolinase family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHV0_9RHIZ
Putative hydantoinase/oxoprolinase family protein {ECO:0000313|EMBL:EYR83744.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydantoinase/oxoprolinase family protein
SCNpilot_expt_1000_bf_scaffold_4159_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13104..13766)
DNA (663bp) protein (221aa)
Putative cytochrome P450 132 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6T2_9RHIZ rbh
Putative cytochrome P450 132 {ECO:0000313|EMBL:EYR83742.1}; EC=1.14.-.- {ECO:0000313|EMBL:EYR83742.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cytochrome p450 protein rbh
Displaying 16 items

View Taxonomy