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SCNpilot_expt_1000_bf_scaffold_4159_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 429..2039

Top 3 Functional Annotations

Value Algorithm Source
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.0
  • Coverage: 536.0
  • Bit_score: 1027
  • Evalue 0.0
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYX9_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 94.0
  • Coverage: 536.0
  • Bit_score: 1027
  • Evalue 0.0
  • rbh
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] similarity KEGG
DB: KEGG
  • Identity: 80.0
  • Coverage: 536.0
  • Bit_score: 873
  • Evalue 3.70e-251
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1611
ATGCAGGAACTCGGCGTTCGCAACCCCGCTCTGGGGCTCACCGCGATGGGTATCAACACCAGCGGCACGGTCCGGTACAACTTTGCAGCAGAGGCCCTCTATGAAGAGGCCCTCGGCCGCGGCGAGGCGGTCAGGACCGCCCATGGGGCGCTTCGCGCGCTCACCGGCCAGCACACCGGCCGCTCGCCGAAGGACAAGTTCGTCGTGCGCGACGAAAACACCGAAGACGCCATCTGGGGGGACAACAACAAGGCCGTGTCGCGCGAACATTTCGACGCGCTGCATGCCGACATGCTGGCCCATGCGGCCGGCCGCGACCTCTTCGTGCAGGATCTGGTCGGCGGTGCCGACGCCGATTACGCCCTGCCGACCCGCGTCGTCACGGAACTCGCCTGGCACTCGCTGTTCATCCGCAACCTGCTCATCCGCCCGGAGGAGAAGGACCTTGCGGCCTTCGCGCCGAAGCTGACCATCATCGACCTGCCGACCTTCAAGGCCGATCCGGCCCGCCACGGCGCGCGCACGGAAACCATGATCGCCTGCGACCTGACGCGCGGCATCGTTCTCATCGCCGGCACCTACTATGCCGGCGAGATGAAGAAGTCGGTCTTCACCGTCCTCAACTGGCTGCTGCCGTCGGAAAAGGTCATGCCGATGCACTGCTCGGCCAATGTCGGCCCGGATGGCGACGCCGCCGTGTTCTTCGGCCTGTCCGGCACCGGCAAGACCACGCTCTCGGCCGACCCGAACCGCACGCTGATCGGCGACGACGAGCACGGCTGGGGCGAGAACGGCATCTTCAACTTCGAGGGCGGCTGCTACGCCAAGACGATCCGCCTTTCGGCCGAGGCCGAGCCGGAAATCTACGCGACGACCCAGCGTTTCGGCACCGTTCTCGAAAACGTCGTGCTCGACGCGCAGGGCGTTCCCGATTTCAACGACGGCTCGCTGACGGAGAACACCCGCTGCGCCTATCCGCTGCACTTCATCCCGAATGCCAGCGATACCGGCCGCGCGCCGCATCCGAAGACGATCATCATGCTGACGGCCGATGCCTTCGGCGTGATGCCGCCGATCGCGCGGCTGACGCCCGACCAGGCCATGTATCACTTCCTCTCCGGCTACACCGCCAAGGTCGCCGGCACGGAACGCGGCGTGACCGAGCCGGAAGCCACCTTCTCGACCTGCTTCGGCGCCCCCTTCATGCCGCGCCACNNNNNNNNNNNNNGCAATCTCCTGAAGGAGCTCATCGCCGAGCACGGCGTCGATTGCTGGCTGGTCAACACCGGCTGGACGGGCGGCGCCTATGGCGAAGGCCGCCGCATGCCGATCAAGGCGACCCGCACGCTTCTCGCCGCCGCCCTCGACGGCTCGCTGAAGAACGCGCTCTTCCGCCGCGACGACAATTTCGGCTTCCAGGTGCCGGTCTCGGTACCGGGCGTCGACACCAAGATCCTCGACCCGCGCTCGACCTGGGCGAACGGCGCGGCCTACGACAGGCAGGCCCGCAAGCTCGTCGACATGTTCGTCGCCAACTTCGAGAAGTTCGAAGGCCAGGTGGACGGCAGCGTGCGCGACGCGGCCCCCGGCCTCAAGGTCGCCGCCGAGTAG
PROTEIN sequence
Length: 537
MQELGVRNPALGLTAMGINTSGTVRYNFAAEALYEEALGRGEAVRTAHGALRALTGQHTGRSPKDKFVVRDENTEDAIWGDNNKAVSREHFDALHADMLAHAAGRDLFVQDLVGGADADYALPTRVVTELAWHSLFIRNLLIRPEEKDLAAFAPKLTIIDLPTFKADPARHGARTETMIACDLTRGIVLIAGTYYAGEMKKSVFTVLNWLLPSEKVMPMHCSANVGPDGDAAVFFGLSGTGKTTLSADPNRTLIGDDEHGWGENGIFNFEGGCYAKTIRLSAEAEPEIYATTQRFGTVLENVVLDAQGVPDFNDGSLTENTRCAYPLHFIPNASDTGRAPHPKTIIMLTADAFGVMPPIARLTPDQAMYHFLSGYTAKVAGTERGVTEPEATFSTCFGAPFMPRHXXXXXNLLKELIAEHGVDCWLVNTGWTGGAYGEGRRMPIKATRTLLAAALDGSLKNALFRRDDNFGFQVPVSVPGVDTKILDPRSTWANGAAYDRQARKLVDMFVANFEKFEGQVDGSVRDAAPGLKVAAE*