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SCNpilot_expt_1000_bf_scaffold_4159_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5927..6670)

Top 3 Functional Annotations

Value Algorithm Source
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CV00_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.5
  • Coverage: 247.0
  • Bit_score: 447
  • Evalue 9.70e-123
  • rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.5
  • Coverage: 247.0
  • Bit_score: 447
  • Evalue 1.40e-122
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] similarity KEGG
DB: KEGG
  • Identity: 90.2
  • Coverage: 244.0
  • Bit_score: 436
  • Evalue 5.40e-120
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 744
ATGATCCTCTTTCCCGCCATCGACCTGAAAGACGGCCAGTGCGTGCGCCTCAAGCTCGGCGACATGGACCAGGCCACCGTCTACAATCCCGACCCAGCCGCGCAGGCGAAAGCCTTCGAGGACCAGGGCTTCGAATGGCTGCATGTCGTCGACCTCAACGGCGCCTTCGCGGGGGAAAGCGTCAACGGCGCCGCCGTCGACGCCATCCTGAAGGCGACGCGGAACCCGGTGCAGCTCGGCGGCGGCATCCGCACGCTGGCGCATATCGAACGCTGGCTGTCGCGCGGCCTCTCGCGCGTCATCCTCGGCACCGTCGCCGTGCGCGATCCTGATCTCGTCATCGCGGCGTGCAAGGCGTTTCCCGGCAAGGTCGCCGTCGGCATCGACGCCAAGGGCGGCAAGGTCGCGGTCGAGGGCTGGGCGGAAGCCTCCGAGCTCGGCGTGATCGAGCTTGCGAAGAAGTTCGAGGGCGCGGGCGTTGCCGCGATCATCTATACCGACATCGACCGCGACGGCATCCTGACGGGCATCAACTGGACCTCGACGCTGGAACTGGCAGCCGCCGTCTCCATCCCCGTCATCGCCTCGGGCGGTCTTGCCTCGATGGACGACATAAGCCGCCTCGTCGCCGCTGACGCCCGCAAGCTGGAAGGCGCGATCTCCGGCCGGGCGCTCTATGACGGCCGCATCGATCCGGCGGAAGCGCTGGCGCTGATCCGCGAAGCACGAGGAGAAGCCGCATGA
PROTEIN sequence
Length: 248
MILFPAIDLKDGQCVRLKLGDMDQATVYNPDPAAQAKAFEDQGFEWLHVVDLNGAFAGESVNGAAVDAILKATRNPVQLGGGIRTLAHIERWLSRGLSRVILGTVAVRDPDLVIAACKAFPGKVAVGIDAKGGKVAVEGWAEASELGVIELAKKFEGAGVAAIIYTDIDRDGILTGINWTSTLELAAAVSIPVIASGGLASMDDISRLVAADARKLEGAISGRALYDGRIDPAEALALIREARGEAA*