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SCNpilot_expt_1000_bf_scaffold_3864_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2546..3103

Top 3 Functional Annotations

Value Algorithm Source
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTB2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.0
  • Coverage: 185.0
  • Bit_score: 347
  • Evalue 1.00e-92
  • rbh
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.0
  • Coverage: 185.0
  • Bit_score: 347
  • Evalue 1.40e-92
cheD; chemotaxis protein CheD; K03411 chemotaxis protein CheD [EC:3.5.1.44] similarity KEGG
DB: KEGG
  • Identity: 84.3
  • Coverage: 185.0
  • Bit_score: 315
  • Evalue 1.00e-83
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
ATGATCGCAGACGCCGGGGCGCGCCGCGTCCATGTCATTCAGGGCGAATACAAGGTCGTCAACGACCCGAATGTGGTGCTCACCACCATTCTCGGTTCGTGCGTGGCCGCCTGCATGCGCGACCCGGTCATTGGCGTCGGTGGCATGAACCACTTCCTGTTGCCGGGCTCCGCCGAGGCCATGGCTTCTGGCGGCGATGCCACGCGCTATGGCGTGCATCTGATGGAGCTTCTGATCAACGGCCTCCTGAAGCAGGGCGCGCGCCGCGACCGGCTGGAGGCGAAGATCTTCGGCGGGGCGCGGACGATCGCGCGGTTCTCCAATGTCGGGGAGCAGAACGCTCGCTTCGCGCGGCAGTTCCTGATGGACGAAGGCATCAGGATCGTCGGCGAGAGCACGGGCGGCGAGCACGGGCGCAAGCTGGAATACTGGCCATCGACCGGCCGGGCCCGGCAATATGCCCTGACCGGCGTCGAGACGCAGAAGACGGTTGCGCTGGAGCAGCAGCGGCCAGCCCCCGTCGTGCGGCCGGCCGAAAGCTCGATCGAATTCTTCTGA
PROTEIN sequence
Length: 186
MIADAGARRVHVIQGEYKVVNDPNVVLTTILGSCVAACMRDPVIGVGGMNHFLLPGSAEAMASGGDATRYGVHLMELLINGLLKQGARRDRLEAKIFGGARTIARFSNVGEQNARFARQFLMDEGIRIVGESTGGEHGRKLEYWPSTGRARQYALTGVETQKTVALEQQRPAPVVRPAESSIEFF*