ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3864_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3864_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..207
DNA (207bp) protein (69aa)
Chemotaxis protein CheW n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4S6_9RHIZ
Chemotaxis protein CheW {ECO:0000313|EMBL:EYR82034.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CheW protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_3864_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

767..1105
DNA (339bp) protein (113aa)
Putative chemotaxis protein methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVU6_9RHIZ
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheR; chemotaxis protein methyltransferase CheR (EC:2.1.1.80)
SCNpilot_expt_1000_bf_scaffold_3864_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1102..2160
DNA (1059bp) protein (353aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheB1; protein-glutamate methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] rbh
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L5Z9_AGRSH rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2160..2549
DNA (390bp) protein (130aa)
Putative chemotaxis protein CheY n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDF4_9RHIZ
Putative chemotaxis protein CheY {ECO:0000313|EMBL:EYR82031.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheY2; chemotaxis regulator protein CheY-like; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_3864_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2546..3103
DNA (558bp) protein (186aa)
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTB2_9RHIZ rbh
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cheD; chemotaxis protein CheD; K03411 chemotaxis protein CheD [EC:3.5.1.44] rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3198..3587
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKT4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82029.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3864_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4060..5562
DNA (1503bp) protein (501aa)
Flagellar M-ring protein FliF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQJ0_9RHIZ rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliF; Flagellar M-ring protein rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6067..6876
DNA (810bp) protein (270aa)
DNA-binding HTH domain-containing protein {ECO:0000313|EMBL:EYR82027.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
luxR; transcriptional regulatory protein yhcZ
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037BD9EB
SCNpilot_expt_1000_bf_scaffold_3864_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6887..7630
DNA (744bp) protein (248aa)
Response regulator receiver protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN44_9RHIZ rbh
DNA-binding HTH domain-containing protein {ECO:0000313|EMBL:EYR82026.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3864_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7702..8145)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR82025.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000367F402
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3864_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8151..9230)
DNA (1080bp) protein (360aa)
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:EYR82024.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flagellar biosynthesis protein FlhB n=1 Tax=Rhizobium giardinii RepID=UPI00037A542A rbh
flhB; flagellar biosynthesis protein FlhB; K02401 flagellar biosynthetic protein FlhB rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9364..10404)
DNA (1041bp) protein (347aa)
Flagellar motor switch protein {ECO:0000313|EMBL:EYR82023.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flagellar motor switch protein FliG n=1 Tax=Rhizobium giardinii RepID=UPI0003618E74 rbh
fliG; flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10436..10693)
DNA (258bp) protein (86aa)
Flagellar motor switch/type III secretory pathway protein {ECO:0000313|EMBL:EYR82022.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flagellar motor switch protein FliN n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036701FC
flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
SCNpilot_expt_1000_bf_scaffold_3864_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11083..11217)
DNA (135bp) protein (45aa)
Flagellar motor switch protein FliM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7J5_9RHIZ
Flagellar motor switch protein FliM {ECO:0000313|EMBL:EYR82021.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliM; flagellar motor switch protein FliM; K02416 flagellar motor switch protein FliM
SCNpilot_expt_1000_bf_scaffold_3864_curated_15
unknown

Not on your lists

11341..11811
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3864_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11994..12872)
DNA (879bp) protein (293aa)
Motility protein A {ECO:0000313|EMBL:EYR82020.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flagellar motor protein MotA n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000366E5D3 rbh
motA; flagellar motor protein MotA; K02556 chemotaxis protein MotA rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13043..13822
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C751_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR82019.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13824..14549
DNA (726bp) protein (242aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPX2_9RHIZ rbh
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:EYR82018.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flgF; flagellar basal body rod protein FlgF; K02391 flagellar basal-body rod protein FlgF rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14574..15965
DNA (1392bp) protein (464aa)
Flagellum-specific ATP synthase FliI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSF4_9RHIZ rbh
Flagellum-specific ATP synthase FliI {ECO:0000313|EMBL:EYR82017.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EYR82017.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliI; flagellum-specific ATP synthase FliI; K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
SCNpilot_expt_1000_bf_scaffold_3864_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15962..16528
DNA (567bp) protein (189aa)
Putative transmembrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX35_9RHIZ rbh
Putative transmembrane protein {ECO:0000313|EMBL:EYR82016.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3864_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16713..17093
DNA (381bp) protein (127aa)
Flagellar basal body protein {ECO:0000313|EMBL:EYR82015.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flgB; flagellar basal body rod protein FlgB
Flagellar basal body rod protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U634_SINMW
SCNpilot_expt_1000_bf_scaffold_3864_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17097..17516
DNA (420bp) protein (140aa)
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flgC; flagellar basal body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MG22_RHISN
SCNpilot_expt_1000_bf_scaffold_3864_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17513..17845
DNA (333bp) protein (111aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMB7_9RHIZ
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fliE; flagellar hook-basal body protein FliE; K02408 flagellar hook-basal body complex protein FliE
SCNpilot_expt_1000_bf_scaffold_3864_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17855..18637
DNA (783bp) protein (261aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6I7_9RHIZ rbh
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:EYR82012.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flgG; flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG rbh
Displaying 24 items

View Taxonomy