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SCNpilot_expt_1000_bf_scaffold_3864_curated_22

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 17097..17516

Top 3 Functional Annotations

Value Algorithm Source
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.5
  • Coverage: 139.0
  • Bit_score: 244
  • Evalue 9.90e-62
flgC; flagellar basal body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC similarity KEGG
DB: KEGG
  • Identity: 78.4
  • Coverage: 139.0
  • Bit_score: 227
  • Evalue 3.70e-57
Flagellar basal-body rod protein FlgC n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MG22_RHISN similarity UNIREF
DB: UNIREF100
  • Identity: 78.4
  • Coverage: 139.0
  • Bit_score: 227
  • Evalue 1.20e-56

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 420
ATGGATCCGCTCGTAGCTTCCCTGAAAGTCGCGGCCTCGGGTATCGAGGCGCAGTCCACCCGCATACGCATCGTCTCGGAAAATCTCGCCAACGCCCGCTCGACGGGTGACACGCCCGGCGCCGATCCCTTCCGCCGCAAGACCGTGACCTTCTCGGCCGAGCTCGACCGCGCGACCAACGCCTCGCTCGTCCAGGTCTCGCGCCTCGGCTTCGACGAAGGCGACTTTTCCAGCGAGTACGATCCCGGCAACCCGGCGGCCGACGAGAAGGGCTTCGTCAAGATGCCGAATGTCAACGTGCTGGTCGAAATGGCCGACATGCGGGAAGCCAATCGCTCCTATGAGGCGAACCTCCAGAGCATCAAGCAGTCGCGCGACCTGATCAGCGCGACGATCGACCTCCTGAGGGCCTCGCAATGA
PROTEIN sequence
Length: 140
MDPLVASLKVAASGIEAQSTRIRIVSENLANARSTGDTPGADPFRRKTVTFSAELDRATNASLVQVSRLGFDEGDFSSEYDPGNPAADEKGFVKMPNVNVLVEMADMREANRSYEANLQSIKQSRDLISATIDLLRASQ*