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SCNpilot_expt_1000_bf_scaffold_3864_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 6887..7630

Top 3 Functional Annotations

Value Algorithm Source
Response regulator receiver protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN44_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.7
  • Coverage: 247.0
  • Bit_score: 441
  • Evalue 4.10e-121
  • rbh
DNA-binding HTH domain-containing protein {ECO:0000313|EMBL:EYR82026.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.7
  • Coverage: 247.0
  • Bit_score: 441
  • Evalue 5.70e-121
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 60.1
  • Coverage: 233.0
  • Bit_score: 279
  • Evalue 1.10e-72

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 744
ATGGATATCCAGCTTCCCGCCTCCGCAACCCTGGAGACGGAAATCCGGCTCGCGCGGCCGGCCAAGGCCACGCGCGCATCCGATTTCGTTTCCCGCCTGCAGGTGATCCAGACGATCCTCGGCGCCCAGCATTTCGCGGTGCTGCGCCTCACCGGCCACGGCCTGCCGTCCGCCCGAAAGCTCACCCTCTCGCTCCATAACTGGGGCCAGGACGTCGACGGCAACGCCCGCGCGCTTATCGAGGCCCACGGCGCGGCGATGCTCGCCCATCTCGAAGTCTCCATGCTGCCGCTGATCTGGGAAGGGGCGGGAGACAGCCATTTCGCCGAATCGGGCGCGGCCCCCTTCACCGAGCGCCTGCCCGCGCGGCTGGTGCCCTGGTCGGGCATGGCCTTCCCGGTTCGCCTCGGCGCGCACGGCAACGGCTATGTCGTCTTCCTCGGCACCTTCATCGCGCCTTCCAGCGATCTCGTCGTCGACATGCACATGAAGAGCTGCCAGGTGCTGATCGACATGCTGGCGAGCGAGGAGAAGAAGCTGGCACCCTCCGAGGCGCTCAGCGAGCGCGAGATCACCTGCCTCCAGATGGCGGGCGATGGTTGCATATCCGAAGCGATCGCGGAGAAGATGGGCCTTTCCGTGCACACGGTGAATGCCTATCTCGGCACGGCGACGACCAAGCTCGACGCGGTGAACCGCATCCAGGCGATCGCGAAGGCCATCCGCCTCGGCTATATTACCTGA
PROTEIN sequence
Length: 248
MDIQLPASATLETEIRLARPAKATRASDFVSRLQVIQTILGAQHFAVLRLTGHGLPSARKLTLSLHNWGQDVDGNARALIEAHGAAMLAHLEVSMLPLIWEGAGDSHFAESGAAPFTERLPARLVPWSGMAFPVRLGAHGNGYVVFLGTFIAPSSDLVVDMHMKSCQVLIDMLASEEKKLAPSEALSEREITCLQMAGDGCISEAIAEKMGLSVHTVNAYLGTATTKLDAVNRIQAIAKAIRLGYIT*