ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4263_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(4606..5496)

Top 3 Functional Annotations

Value Algorithm Source
Iron ABC transporter substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLK0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.0
  • Coverage: 300.0
  • Bit_score: 532
  • Evalue 2.80e-148
  • rbh
ABC-type metal ion transport system periplasmic component {ECO:0000313|EMBL:EYR80593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.0
  • Coverage: 300.0
  • Bit_score: 532
  • Evalue 3.90e-148
iron ABC transporter substrate binding protein; K11604 manganese/iron transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 296.0
  • Bit_score: 454
  • Evalue 2.30e-125
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 891
ATGATCCTCCGCTCCCTTGCCGCCCTCCTCTTCAGCCTGCCGCTCCTGTCGGCCGCCCCGGCCATCGCGCAGGAAAAGCCGAAGGTGGTGACGACCTTCACCATCATCGCCGACATCGCGGCGAATGTGGCGGGCGATGCGGCCACGGTGGAATCGATCACCAAGCCTGGCGCGGAGATCCACAACTACCAGCCGACGCCGCGCGACATCCTCAAGGCGCAGGACGCCAGGCTCGTCCTGTGGAACGGCCTCAACCTCGAACTCTGGTTCGAGAAGTTCCTCGCCAATCTCGGCGACGTACCGAACGTCACGGTCAGCGACGGCGTTACGCCGATGAGCATCGTGGATGGCCCCTACGAGGGCAAGCCGAACCCGCATGCCTGGATGTCGCCGGACAATGCGCTGATCTATGTCGAGAACATCCGCAAGGCGCTCGGCGCGCTCGACCCGGCCAACGCCGCGACCTACGACGCCAACGCCAAGGCCTATTCGGACAAGATCACGGCGCTCGGCGCCGAGATGAAGGCGAAGATCGGCGCGCTGCCGGCGGAAAAGCGCTGGCTGGTCACCAGCGAAGGCGCCTTCTCCTATCTCGCCCGTGATTTCGGGCTGAAGGAACTCTTCCTCTGGCCGATCAACGCCGACCAGCAGGGTACGCCCAGGCAGGTGAAGGCGGTGATCGACGCCGTGCGCGAGCACCATATCCATGTCGTCTTCAGCGAAAGCACCGTTTCCGCCGACCCGGCCAGGCAGGTGGCGGCCGAAACCGGCGCGACCTATGGCGGCGTCCTCTATGTCGACTCGCTGAGCGAGGCGGACGGCCCCGTGCCGACCTACCTCGACCTCCTGCGCGTGACCTCCGAAACCATCGTGAAAGGCCTTTCGCAATGA
PROTEIN sequence
Length: 297
MILRSLAALLFSLPLLSAAPAIAQEKPKVVTTFTIIADIAANVAGDAATVESITKPGAEIHNYQPTPRDILKAQDARLVLWNGLNLELWFEKFLANLGDVPNVTVSDGVTPMSIVDGPYEGKPNPHAWMSPDNALIYVENIRKALGALDPANAATYDANAKAYSDKITALGAEMKAKIGALPAEKRWLVTSEGAFSYLARDFGLKELFLWPINADQQGTPRQVKAVIDAVREHHIHVVFSESTVSADPARQVAAETGATYGGVLYVDSLSEADGPVPTYLDLLRVTSETIVKGLSQ*