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SCNpilot_expt_1000_bf_scaffold_4263_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4263_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..450)
DNA (450bp) protein (150aa)
Pyrimidine-specific ribonucleoside hydrolase RihB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW94_9RHIZ
Pyrimidine-specific ribonucleoside hydrolase RihB {ECO:0000313|EMBL:EYR80598.1}; EC=3.2.2.8 {ECO:0000313|EMBL:EYR80598.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inosine-uridine preferring nucleoside hydrolase (EC:3.2.2.1)
SCNpilot_expt_1000_bf_scaffold_4263_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(701..1936)
DNA (1236bp) protein (412aa)
D-amino acid dehydrogenase small subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETL7_9RHIZ rbh
D-amino acid dehydrogenase small subunit {ECO:0000313|EMBL:EYR80597.1}; EC=1.4.99.1 {ECO:0000313|EMBL:EYR80597.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative D-amino acid dehydrogenase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
SCNpilot_expt_1000_bf_scaffold_4263_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2041..2883)
DNA (843bp) protein (281aa)
Iron ABC transporter, membrane spanning protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBV9_9RHIZ rbh
Iron ABC transporter, membrane spanning protein {ECO:0000313|EMBL:EYR80596.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
yfeD; Chelated iron transport system membrane protein YfeD rbh
SCNpilot_expt_1000_bf_scaffold_4263_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2880..3752)
DNA (873bp) protein (291aa)
ABC-type Mn2+/Zn2+ transport system, permease component {ECO:0000313|EMBL:EYR80595.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein n=1 Tax=Amorphus coralli RepID=UPI0003770B57 rbh
yfeC; Chelated iron transport system membrane protein YfeC rbh
SCNpilot_expt_1000_bf_scaffold_4263_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3749..4609)
DNA (861bp) protein (287aa)
Iron ABC transporter ATPase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGQ7_9RHIZ rbh
ABC-type Mn/Zn transport systemATPase component {ECO:0000313|EMBL:EYR80594.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sitB; iron ABC transporter ATPase; K11607 manganese/iron transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4263_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4606..5496)
DNA (891bp) protein (297aa)
Iron ABC transporter substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLK0_9RHIZ rbh
ABC-type metal ion transport system periplasmic component {ECO:0000313|EMBL:EYR80593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
iron ABC transporter substrate binding protein; K11604 manganese/iron transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4263_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5707..6387
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BY44_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80592.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4263_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6526..7395
DNA (870bp) protein (290aa)
Glycine--tRNA ligase beta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMS2_9RHIZ
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glyS; glycine--tRNA ligase beta subunit GlyS (EC:6.1.1.14)
Displaying 8 items

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