ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7026_curated_1

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3..272)

Top 3 Functional Annotations

Value Algorithm Source
UPF0235 protein SHLA_6c000880 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.3
  • Coverage: 89.0
  • Bit_score: 136
  • Evalue 2.40e-29
hypothetical protein; K09131 hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 67.8
  • Coverage: 90.0
  • Bit_score: 125
  • Evalue 9.70e-27
UPF0235 protein SFHH103_03226 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2F3_RHIFH similarity UNIREF
DB: UNIREF100
  • Identity: 67.8
  • Coverage: 90.0
  • Bit_score: 125
  • Evalue 3.10e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
GTGACGCCGGCGCTCACCCGCCATGGCGACCATGTGCGCCTGACCGTGCGGCTGACCCCGAACGGCGGGCGCGATAACATCGACGGATGGGAAACGGGCGCGGACGGCGCAAGCCACCTGAGGGCACGCGTCAGCGATCCGCCGGACAAGGGCAAGGCCAACAAGGCGCTGATCGTGCTGGTCGCCAGGGCGGCCGGCGTCGCCAGGTCCGCCGTCAGCCTCGTTTCCGGCGATACCCAGAGAAAGAAAATCCTCCGGATCGAGGGCGAA
PROTEIN sequence
Length: 90
VTPALTRHGDHVRLTVRLTPNGGRDNIDGWETGADGASHLRARVSDPPDKGKANKALIVLVARAAGVARSAVSLVSGDTQRKKILRIEGE