name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_7026_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..272)
|
UPF0235 protein SHLA_6c000880 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09131 hypothetical protein
UPF0235 protein SFHH103_03226 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2F3_RHIFH
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(269..565)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR79685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K02221 YggT family protein
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDS2_SINMW
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(669..1385)
|
Glutamine amidotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP16_9RHIZ
rbh
Glutamine amidotransferase {ECO:0000313|EMBL:EYR79686.1}; EC=6.3.5.2 {ECO:0000313|EMBL:EYR79686.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1389..1874)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C889_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79687.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1899..3470)
|
HemY domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER34_9RHIZ
rbh
HemY domain-containing protein {ECO:0000313|EMBL:EYR79688.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein; K02498 HemY protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3482..4297)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTJ7_9RHIZ
rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79689.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4831..5292)
|
Uroporphyrinogen-III synthase protein HemD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY57_9RHIZ
Uroporphyrinogen-III synthase protein HemD {ECO:0000313|EMBL:EYR79690.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hemD; uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_8
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5667..6449
|
Uncharacterized protein {ECO:0000313|EMBL:EWS59409.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6514..7608
|
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C892_9RHIZ
rbh
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphapr
gcp; tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7760..8536
|
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000369DC56
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8552..8845
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79694.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09780 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8852..9283
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C634_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79695.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9627..9989
|
Putative methyltransferase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLW2_9RHIZ
Putative methyltransferase protein {ECO:0000313|EMBL:EYR79696.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10005..10436)
|
Uncharacterized protein {ECO:0000313|EMBL:EYR79697.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10736..11128
|
Uncharacterized protein {ECO:0000313|EMBL:EYR79698.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sdhC; Succinate dehydrogenase cytochrome b-556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase cytochrome b-556 subunit n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A296_RHIFH
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11139..11519
|
Succinate dehydrogenase hydrophobic membrane anchor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY5_9RHIZ
Succinate dehydrogenase hydrophobic membrane anchor {ECO:0000313|EMBL:EYR79699.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sdhD; succinate dehydrogenase hydrophobic membrane anchor (EC:1.3.99.1); K00242 succinate dehydrogenase membrane anchor subunit
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_17
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11570..11743)
|
Uncharacterized protein {ECO:0000313|EMBL:EYD78058.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12511..13377
|
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J4_9RHIZ
rbh
sdhA; succinate dehydrogenase flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13396..14175
|
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRI2_9RHIZ
rbh
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14317..14820
|
Outer membrane lipoprotein omp19 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBL8_9RHIZ
Outer membrane lipoprotein omp19 {ECO:0000256|PIRNR:PIRNR034005}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative outer membrane lipoprotein Omp19
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14853..16034
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETD4_9RHIZ
rbh
Putative ATPase {ECO:0000313|EMBL:EYR79703.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AFG1 family ATPase; K06916
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_7026_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16212..16469
|
Malate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY9_9RHIZ
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mdh2; malate dehydrogenase (EC:1.1.1.37)
|