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SCNpilot_expt_1000_bf_scaffold_7026_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7026_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..272)
DNA (270bp) protein (90aa)
UPF0235 protein SHLA_6c000880 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09131 hypothetical protein
UPF0235 protein SFHH103_03226 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2F3_RHIFH
SCNpilot_expt_1000_bf_scaffold_7026_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(269..565)
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR79685.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K02221 YggT family protein
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDS2_SINMW
SCNpilot_expt_1000_bf_scaffold_7026_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(669..1385)
DNA (717bp) protein (239aa)
Glutamine amidotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP16_9RHIZ rbh
Glutamine amidotransferase {ECO:0000313|EMBL:EYR79686.1}; EC=6.3.5.2 {ECO:0000313|EMBL:EYR79686.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1389..1874)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C889_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79687.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7026_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1899..3470)
DNA (1572bp) protein (524aa)
HemY domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER34_9RHIZ rbh
HemY domain-containing protein {ECO:0000313|EMBL:EYR79688.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transmembrane protein; K02498 HemY protein rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3482..4297)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTJ7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79689.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7026_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4831..5292)
DNA (462bp) protein (154aa)
Uroporphyrinogen-III synthase protein HemD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY57_9RHIZ
Uroporphyrinogen-III synthase protein HemD {ECO:0000313|EMBL:EYR79690.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hemD; uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
SCNpilot_expt_1000_bf_scaffold_7026_curated_8
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5667..6449
DNA (783bp) protein (261aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS59409.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_expt_1000_bf_scaffold_7026_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6514..7608
DNA (1095bp) protein (365aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C892_9RHIZ rbh
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphapr
gcp; tRNA threonylcarbamoyladenosine biosynthesis protein Gcp rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7760..8536
DNA (777bp) protein (259aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000369DC56
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
SCNpilot_expt_1000_bf_scaffold_7026_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8552..8845
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79694.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09780 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7026_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8852..9283
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C634_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79695.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7026_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9627..9989
DNA (363bp) protein (121aa)
Putative methyltransferase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLW2_9RHIZ
Putative methyltransferase protein {ECO:0000313|EMBL:EYR79696.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7026_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10005..10436)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR79697.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_7026_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10736..11128
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR79698.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sdhC; Succinate dehydrogenase cytochrome b-556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase cytochrome b-556 subunit n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A296_RHIFH
SCNpilot_expt_1000_bf_scaffold_7026_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11139..11519
DNA (381bp) protein (127aa)
Succinate dehydrogenase hydrophobic membrane anchor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY5_9RHIZ
Succinate dehydrogenase hydrophobic membrane anchor {ECO:0000313|EMBL:EYR79699.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sdhD; succinate dehydrogenase hydrophobic membrane anchor (EC:1.3.99.1); K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_expt_1000_bf_scaffold_7026_curated_17
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11570..11743)
DNA (174bp) protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:EYD78058.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
SCNpilot_expt_1000_bf_scaffold_7026_curated_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12511..13377
DNA (867bp) protein (289aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0J4_9RHIZ rbh
sdhA; succinate dehydrogenase flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13396..14175
DNA (780bp) protein (260aa)
Succinate dehydrogenase iron-sulfur subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRI2_9RHIZ rbh
Succinate dehydrogenase iron-sulfur subunit {ECO:0000256|RuleBase:RU361237}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU361237};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14317..14820
DNA (504bp) protein (168aa)
Outer membrane lipoprotein omp19 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBL8_9RHIZ
Outer membrane lipoprotein omp19 {ECO:0000256|PIRNR:PIRNR034005}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative outer membrane lipoprotein Omp19
SCNpilot_expt_1000_bf_scaffold_7026_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14853..16034
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETD4_9RHIZ rbh
Putative ATPase {ECO:0000313|EMBL:EYR79703.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AFG1 family ATPase; K06916 rbh
SCNpilot_expt_1000_bf_scaffold_7026_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16212..16469
DNA (258bp) protein (86aa)
Malate dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVY9_9RHIZ
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mdh2; malate dehydrogenase (EC:1.1.1.37)
Displaying 22 items

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